View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8004_low_16 (Length: 227)

Name: NF8004_low_16
Description: NF8004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8004_low_16
NF8004_low_16
[»] chr5 (3 HSPs)
chr5 (18-211)||(40946786-40946986)
chr5 (82-172)||(4077935-4078026)
chr5 (128-207)||(16352043-16352122)
[»] chr8 (3 HSPs)
chr8 (18-175)||(26955546-26955716)
chr8 (161-211)||(26955488-26955538)
chr8 (110-210)||(30850089-30850189)
[»] chr3 (2 HSPs)
chr3 (82-203)||(44712408-44712530)
chr3 (134-207)||(46835455-46835528)
[»] chr6 (2 HSPs)
chr6 (114-210)||(23073336-23073432)
chr6 (111-173)||(34008763-34008825)
[»] chr7 (2 HSPs)
chr7 (82-149)||(18941183-18941252)
chr7 (110-193)||(22007437-22007521)
[»] chr2 (1 HSPs)
chr2 (139-214)||(26449166-26449241)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 40946986 - 40946786
Alignment:
Q  18 agtttttggtttgaaaatagtagcaatacatgggaaacctacagaag---ttgagaagtctgccgtgggaaagtggaggagaatat--tggtgt--agcg 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||  |||| |  ||||    
T  40946986 agttttttgtttgaaaatagtagcaatacatgggaaacctacagaagaagttgagaagtctgccgtgggaaagtggaggagaatatattggtatgaagcg 40946887  T
Q  111 tatgttaccaatgcacctgtgacttaaaattgaaagaaaatatttattgaaaatagatggattgtatagagatcaacatagatttatctaacggccagaa 210  Q
    || ||||||||||||| | ||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40946886 tacgttaccaatgcacttatgatttaaaattgaaagaaaatgtttattggaaatagatggattgtgtagagatcaacatagatttatctaacggccagaa 40946787  T
Q  211 t 211  Q
    |    
T  40946786 t 40946786  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 4078026 - 4077935
Alignment:
Q  82 ggaaagtggaggagaatattggtgt--agcgtatgttaccaatgcacctgtgacttaaaattgaaagaaaatatttattgaaaatagatggat 172  Q
    ||||||| |||||||||||||||||  || ||| |||||||||| || |||||||||||||||||||||| | ||||||| ||| ||||||||    
T  4078026 ggaaagtagaggagaatattggtgtgaagtgta-gttaccaatgaacttgtgacttaaaattgaaagaaattgtttattggaaacagatggat 4077935  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 16352043 - 16352122
Alignment:
Q  128 tgtgacttaaaattgaaagaaaatatttattgaaaatagatggattgtatagagatcaacatagatttatctaacggcca 207  Q
    |||||||||||||||||||||  | ||||||| ||| ||||||| |||   |||||||| ||||||| ||||||||||||    
T  16352043 tgtgacttaaaattgaaagaaggtgtttattggaaagagatggaatgtgcggagatcaaaatagattcatctaacggcca 16352122  T

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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 26955716 - 26955546
Alignment:
Q  18 agtttttggtttgaaaatagtagcaatacatgggaaacctaca---gaagttgagaagtctgccgtgggaaagtggaggaga--atattggtgt------ 106  Q
    ||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||  ||||||||||          
T  26955716 agttttttgtttgaaaatagtagcaatacatgggaaacctacagaagaagttgagaagtctgccgtgggaaagtggaggagaatatattggtgtgaagcg 26955617  T
Q  107 --agcgtatgttaccaatgcacctgtgacttaaaattgaaagaaaatatttattgaaaatagatggattgt 175  Q
       ||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||||||||||||||    
T  26955616 tatgcgtatgttaccaatgcacttatgacttaaaattgaaagaaaatgtttattggaaatagatggattgt 26955546  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 26955538 - 26955488
Alignment:
Q  161 aaatagatggattgtatagagatcaacatagatttatctaacggccagaat 211  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  26955538 aaatagatggattgtgtagagatcaacatagatttatctaacggtcagaat 26955488  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 30850089 - 30850189
Alignment:
Q  110 gtatgttaccaatgcacctgtgacttaaaattgaaagaaaatatttattgaaaatagatggattgtatagagatcaacatagatttatctaacggccaga 209  Q
    ||||||||||||||||| ||||| |||||||||||||| | | |||||||  || | || |||||| |  ||||||||| | ||| ||||||||||||||    
T  30850089 gtatgttaccaatgcacttgtgatttaaaattgaaagatagtgtttattgggaacaaatagattgtgtgtagatcaacacatattgatctaacggccaga 30850188  T
Q  210 a 210  Q
    |    
T  30850189 a 30850189  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 44712408 - 44712530
Alignment:
Q  82 ggaaagtggaggagaatattggtgt--agcgtatgttaccaatgcacctgtgacttaaaattgaaagaaaatatttattgaaaatagatggattgtatag 179  Q
    |||||||||| ||||||||||||||  || ||| ||||||||||||| |||||||||||||||||| |||||||||||||| || ||||||||||| | |    
T  44712408 ggaaagtggaagagaatattggtgtgaagtgtacgttaccaatgcacttgtgacttaaaattgaaa-aaaatatttattgagaaaagatggattgtgtgg 44712506  T
Q  180 agatcaacatagatttatctaacg 203  Q
    |||||||||| |||| ||||||||    
T  44712507 agatcaacatggattcatctaacg 44712530  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 46835455 - 46835528
Alignment:
Q  134 ttaaaattgaaagaaaatatttattgaaaatagatggattgtatagagatcaacatagatttatctaacggcca 207  Q
    |||||||||||||| ||  ||||||||||||||||||||||| | |||||||| | ||||  ||||||| ||||    
T  46835455 ttaaaattgaaagacaacttttattgaaaatagatggattgtgtggagatcaataaagatgcatctaacagcca 46835528  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 23073336 - 23073432
Alignment:
Q  114 gttaccaatgcacctgtgacttaaaattgaaagaaaatatttattgaaaatagatggattgtatagagatcaacatagatttatctaacggccagaa 210  Q
    ||||||||| ||| |||||||| ||||||||||||| | |||||||| || ||||||||||| | |||||| |||||||||||| ||||||||||||    
T  23073336 gttaccaatccacttgtgacttgaaattgaaagaaattgtttattgacaacagatggattgtgtggagatctacatagatttatttaacggccagaa 23073432  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 34008825 - 34008763
Alignment:
Q  111 tatgttaccaatgcacctgtgacttaaaattgaaagaaaatatttattgaaaatagatggatt 173  Q
    |||||||||||||||  | ||||||||||||||||||   | |||||||||||||||||||||    
T  34008825 tatgttaccaatgcagttctgacttaaaattgaaagacggtgtttattgaaaatagatggatt 34008763  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 18941183 - 18941252
Alignment:
Q  82 ggaaagtggaggagaatattggtgt--agcgtatgttaccaatgcacctgtgacttaaaattgaaagaaa 149  Q
    |||||||||||||||||||||||||  || ||| ||||||||||||| ||||||||||||||||||||||    
T  18941183 ggaaagtggaggagaatattggtgtgaagtgtacgttaccaatgcacttgtgacttaaaattgaaagaaa 18941252  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 22007521 - 22007437
Alignment:
Q  110 gtatgttaccaatgcacctgtgacttaaaattgaaaga-aaatatttattgaaaatagatggattgtatagagatcaacatagat 193  Q
    |||||||||||||||| ||||||||| ||| ||||||| |  |||| ||||  || |||| |||||| ||||||| |||||||||    
T  22007521 gtatgttaccaatgcaactgtgacttgaaactgaaagagacgtattaattgggaacagattgattgtctagagattaacatagat 22007437  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 26449241 - 26449166
Alignment:
Q  139 attgaaagaaaatatttattgaaaatagatggattgtatagagatcaacatagatttatctaacggccagaataat 214  Q
    ||||||||||||| |||||||  || ||||| ||||| | ||||||||| |||||||||||||||| |||||||||    
T  26449241 attgaaagaaaatgtttattgggaacagatgaattgtgtggagatcaacttagatttatctaacggtcagaataat 26449166  T

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