View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8004_low_2 (Length: 576)
Name: NF8004_low_2
Description: NF8004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8004_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 23748848 - 23748294
Alignment:
| Q |
1 |
tgtacaggaaaatagaatgaaatatgtatataataactataactataggttcatattgtgattctgttgtttggctggaaaaagcaactagccattcaca |
100 |
Q |
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| T |
23748848 |
tgtacaggaaaatagaatgaaatatgtatataataactataactataggttcatattgtgattcttttgtttggctggaaaaagcaactagccattcaaa |
23748749 |
T |
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| Q |
101 |
actttgtcaatgcagtacaacgtttccctccatgtcactaaagatggacaattctatcacaatatcttcctatttatctgcaaaaatgcacacaagagat |
200 |
Q |
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| T |
23748748 |
actttgtcactgcagtacaatgtttccttccatgttactaaagatggacaacttggtcacaatatcttcctatttatctgcaaaaatacacacaacagat |
23748649 |
T |
|
| Q |
201 |
taataacacatcttacctagcagtttgaaaacatggtcaagattatgttaatcacggatttggattccctgtagtcaagtaattgcacattcgcgcagcg |
300 |
Q |
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| T |
23748648 |
taataacacatcttacctagcagtttgaaaacatggtcaagattatgttaatcacggatttggattccctgtagtcaagtaatcgcacattcgcgcagcg |
23748549 |
T |
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| Q |
301 |
taaatttccaaattgcatgggctcgtggcatcaggaaatccaaatccgtaaattataggtacatactaaatttctgatttggccaagttgatttcaaacc |
400 |
Q |
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| T |
23748548 |
taaatttccaaattgcatgggctcgtggcatcaggaaatccaaatccgtaaattataggtacatactaaatttctgatttggccaagttgatttcaaacc |
23748449 |
T |
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| Q |
401 |
tttcatggtcctcttgaaatccacttcgccgaatcataaatttaagaatttaatgaatgcaagctaatcgcgtattttggttaccatttggatcagaaac |
500 |
Q |
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| T |
23748448 |
tttcatagtcctcttgaaatccacttcgccgaatcataaatttaagaatttaatgaatgcaagctaatcgcgtattttggttaccatttggatcagaaac |
23748349 |
T |
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| Q |
501 |
tcgtataccttgaggatcatatttccctaggcaagtgtactcttttaataataga |
555 |
Q |
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| T |
23748348 |
tcgtataccttgaggatcatatttccctaggcaagtgtactcttttaataataga |
23748294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 23753601 - 23753544
Alignment:
| Q |
38 |
tataactataggttcatattgtgattctgttgtttggctggaaaaagcaactagccat |
95 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
23753601 |
tataactatagtttcatattgtgattctgttgtttggttggagaaagaaactagccat |
23753544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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