View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8004_low_3 (Length: 535)
Name: NF8004_low_3
Description: NF8004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8004_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 229 - 520
Target Start/End: Complemental strand, 45889676 - 45889385
Alignment:
| Q |
229 |
ctgatacggacacctattataattagtcctatctattgcttagtgtcaaagtccgtaatgatgaatagctcccaaatttacactttcctagacttgttaa |
328 |
Q |
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| T |
45889676 |
ctgatactgacacctattataattagtcctatctattgcttagtgtcaaagtccgtaatgatgaatagctcccaaatttacactttcctagacttgttaa |
45889577 |
T |
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| Q |
329 |
ttgcatttgtgagcatgttgtgcatgatccatgtatttgatagtaagctgaaagtggtttatgtaacacaaagacaggatgacagaggtacaagtgtagc |
428 |
Q |
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| T |
45889576 |
ttgcatttgtgagcatgttgtgcatgatccatgtatttgatagtaagctgaaagtggtttatgtaacacaaagacaggatgacataggtacaagtgtagc |
45889477 |
T |
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| Q |
429 |
ctatagtgagaaaaatcatgcgaagttcacacagaactatacaattactttgataggttaatattctcttatgagaattgatatttgaacac |
520 |
Q |
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| T |
45889476 |
ctatagtgagaaaaatcatgcgaagttcacacagaactatacaattactttgataggttaatattctcttatgagaattgatatttgaacac |
45889385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 45889862 - 45889720
Alignment:
| Q |
70 |
gaaaagtttaggcgagttgggaaatgttaattgtttctacatcactgatttgcaatgaaacaaatcttcgttgaaaatttctagttgctattgatatgct |
169 |
Q |
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| T |
45889862 |
gaaaagtttaggcgagttgggaaattttaattgtttctacatcactgatttgcaatgaaacaaatcttcgttgaaaatttctagttgctattgatatgct |
45889763 |
T |
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| Q |
170 |
gataatgtgacatctgattcattactcagtttcaaactttgtg |
212 |
Q |
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| T |
45889762 |
gataatgtgacatctgattcattactcagtttcaaactttgtg |
45889720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45889931 - 45889891
Alignment:
| Q |
1 |
tcttttggatctgcttaacaccatggtttgaataatgttaa |
41 |
Q |
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| T |
45889931 |
tcttttggatctgcttaacaccatggtttgaataatgttaa |
45889891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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