View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8004_low_6 (Length: 428)
Name: NF8004_low_6
Description: NF8004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8004_low_6 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 14455972 - 14455572
Alignment:
| Q |
18 |
ttctgctactaaagaaaggtcaactccattcatgacaagatatttcaaagatacaagaccagccacccattgaagattttcaacatgcaagctataatcg |
117 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||| || || || ||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
14455972 |
ttctgctactaatgaaaggtcaactccattcatgacaagatatttcaaggagacgaggccagctacccattgtagattttcaacatgcaagctataatcg |
14455873 |
T |
|
| Q |
118 |
gtgagatcaagagattgcaagcgagaaaggtttcccaaatgaggtggaattaaaccagcaaagccagcagttgagaggttcagatattgcaaattcacca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14455872 |
gtgagatcaagagattgcaagcgagaaaggtttcccaaatggggtggaattaaaccagcaaagccagcagttgacaggttcagatattgcaaattcacca |
14455773 |
T |
|
| Q |
218 |
atgatcctaaaaaattaggaattggaatttcaccaaatgtgttgaagctcaagtctaaatgtcttagtgatttgagcttcaacaaagatggtcttagctc |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14455772 |
atgatcctaaaaaattaggaattggaatttcaccaaatgtgttgaagctcaagtctaaatgtcttagtgatttgagcttcaacaaagatggtcttagctc |
14455673 |
T |
|
| Q |
318 |
accactcaggttccacattccatacctgctaggaggataatcaaatgatggtggatgcgggttatggagatcgattgaaatgaccgcacctgtgatgtta |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
14455672 |
accactcaggttccacattccatacctgctaggaggataatcaaatgatggtggatgtggattatggagatcaattgaaatgaccgcacctgtgatgtta |
14455573 |
T |
|
| Q |
418 |
t |
418 |
Q |
| |
|
| |
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|
| T |
14455572 |
t |
14455572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 31 - 332
Target Start/End: Original strand, 14495391 - 14495692
Alignment:
| Q |
31 |
gaaaggtcaactccattcatgacaagatatttcaaagatacaagaccagccacccattgaagattttcaacatgcaagctataatcggtgagatcaagag |
130 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||| ||| |||||||||| || |
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| T |
14495391 |
gaaaggtcaactccatccatggcaagatatttcaaagagacaaggccagtcacccattgtagattttcaacatgcaagctattatctgtgagatcaatag |
14495490 |
T |
|
| Q |
131 |
attgcaagcgagaaaggtttcccaaatgaggtggaattaaaccagcaaagccagcagttgagaggttcagatattgcaaattcaccaatgatcctaaaaa |
230 |
Q |
| |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14495491 |
attgcaagtgagaaaggtttcccaaatggggtggaattaaaccagcaaagccagcagttgacaggttcagatattgcaaattcaccaatgatcctaaaaa |
14495590 |
T |
|
| Q |
231 |
attaggaattggaatttcaccaaatgtgttgaagctcaagtctaaatgtcttagtgatttgagcttcaacaaagatggtcttagctcaccactcaggttc |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
14495591 |
cttaggaattggaatttcaccaaatgtgttgaagctcaagtctaaatgccgtagcgacttgagcttcatcaaagatggtcttagctcaccactcagtttc |
14495690 |
T |
|
| Q |
331 |
ca |
332 |
Q |
| |
|
|| |
|
|
| T |
14495691 |
ca |
14495692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 31 - 418
Target Start/End: Original strand, 14470970 - 14471357
Alignment:
| Q |
31 |
gaaaggtcaactccattcatgacaagatatttcaaagatacaagaccagccacccattgaagattttcaacatgcaagctataatcggtgagatcaagag |
130 |
Q |
| |
|
||||||||||||| || |||| |||||| ||||||||| ||||| ||||||| ||| || ||||||||||||||||| ||| || | ||||||||||| |
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| T |
14470970 |
gaaaggtcaactctatccatggcaagatgtttcaaagagacaaggccagccaaccagtgtagattttcaacatgcaatctaaaagcaccgagatcaagag |
14471069 |
T |
|
| Q |
131 |
attgcaagcgagaaaggtttcccaaatgaggtggaattaaaccagcaaagccagcagttgagaggttcagatattgcaaattcaccaatgatcctaaaaa |
230 |
Q |
| |
|
|||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||| ||||| || |||||||||||||| |
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| T |
14471070 |
attgcaagtgagaaagatttcccaaatggggtggaattaaaccagcaaatccagcatttgaaaggttcagatattgtaaatttactaatgatcctaaaaa |
14471169 |
T |
|
| Q |
231 |
attaggaattggaatttcaccaaatgtgttgaagctcaagtctaaatgtcttagtgatttgagcttcaacaaagatggtcttagctcaccactcaggttc |
330 |
Q |
| |
|
||||| ||||| ||| | | |||||||||||||||||||||||||| |||||||||||||| |||| |||||| |||||||||||||||| |||||| |
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|
| T |
14471170 |
cttaggtattggtattgctctgaatgtgttgaagctcaagtctaaatgccttagtgatttgagtttcatcaaagacggtcttagctcaccacgtaggttc |
14471269 |
T |
|
| Q |
331 |
cacattccatacctgctaggaggataatcaaatgatggtggatgcgggttatggagatcgattgaaatgaccgcacctgtgatgttat |
418 |
Q |
| |
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|||||| ||||| || | |||| | ||| | ||| | | ||| ||||||||||||||| |||| || |||||||||||||||||||| |
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| T |
14471270 |
cacatttcatacttgttcggagaagaatgatatggttttcgatacgggttatggagatcaattgcaacgaccgcacctgtgatgttat |
14471357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 20 - 418
Target Start/End: Complemental strand, 14460460 - 14460071
Alignment:
| Q |
20 |
ctgctactaaagaaaggtcaactccattcatgacaagatatttcaaagatacaagaccagccacccattgaagattttcaacatgcaagctataatcggt |
119 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| |||||||||||||||| ||||| ||| | |||||||||| ||||||||||||||||| | | | |
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|
| T |
14460460 |
ctgctactgatgaaaggtcaactccattcatggcaagatatttcaaagagacaaggccaacaacccattgaaaattttcaacatgcaagccaacagtttt |
14460361 |
T |
|
| Q |
120 |
gagatcaagagattgcaagcgagaaaggtttcccaaatgaggtggaattaaaccagcaaagccagcagttgagaggttcagatattgcaaattcaccaat |
219 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
14460360 |
gagatcaagatattgcaagtgagaaaggtttcccaaatggggtggaattaaaccagca---------gttgacaggttcagatattgcaaattcaccaat |
14460270 |
T |
|
| Q |
220 |
gatcctaaaaaattaggaattggaatttcaccaaatgtgttgaagctcaagtctaaatgtcttagtgatttgagcttcaacaaagatggtcttagctcac |
319 |
Q |
| |
|
||||| || || | |||||||| ||| || |||||||||||||||||||||||||| | ||| || |||||||||| |||||||||||||||||||| |
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|
| T |
14460269 |
gatccaaagaactcgggaattggtattccattgaatgtgttgaagctcaagtctaaatgccgtagcgacttgagcttcatcaaagatggtcttagctcac |
14460170 |
T |
|
| Q |
320 |
cactcaggttccacattccatacctgctaggaggataatcaaatgatggtggatgcgggttatggagatcgattgaaatgaccgcacctgtgatgttat |
418 |
Q |
| |
|
|||| ||||||||||| ||||| | ||||||| | ||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||| |
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|
| T |
14460169 |
cactttggttccacatttcatactttctaggagaagaatcaaagagcaccggatgtgggttatggagatcgattgaaacgaccgcgcctgtgatgttat |
14460071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 14495692 - 14495754
Alignment:
| Q |
356 |
aatcaaatgatggtggatgcgggttatggagatcgattgaaatgaccgcacctgtgatgttat |
418 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
14495692 |
aatcaaatgacggtggatgcgggttatggagatcgattgaaatgaccgcgcctgtgttgttat |
14495754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 60 - 418
Target Start/End: Complemental strand, 9999 - 9650
Alignment:
| Q |
60 |
tttcaaagatacaagaccagccacccattgaagattttcaacatgcaagctataatcggtgagatcaagagattgcaagcgagaaaggtttcccaaatga |
159 |
Q |
| |
|
||||||||| |||| ||| |||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
9999 |
tttcaaagagacaaatccatccacccattgtagattttcaacatgcaagctattatctgtgagatcaagagattgcaagagagaaaggtttcccaaatgg |
9900 |
T |
|
| Q |
160 |
ggtggaattaaaccagcaaagccagcagttgagaggttcagatattgcaaattcaccaatgatcctaaaaaattaggaattggaatttcaccaaatgtgt |
259 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || || | |||||||| ||| || ||||||| |
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|
| T |
9899 |
ggtggaattaaaccagca---------gttgacaggttcagatattgcaaattcaccaatgatccaaagaactcgggaattggtattccattgaatgtgt |
9809 |
T |
|
| Q |
260 |
tgaagctcaagtctaaatgtcttagtgatttgagcttcaacaaagatggtcttagctcaccactcaggttccacattccatacctgctaggaggataatc |
359 |
Q |
| |
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||||||||||||||||||| | ||| || |||||||||| |||||||||||||||||||||||| ||||||||||| ||||| | ||||||| | |||| |
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|
| T |
9808 |
tgaagctcaagtctaaatgccgtagcgacttgagcttcatcaaagatggtcttagctcaccactttggttccacatttcatactttctaggagaagaatc |
9709 |
T |
|
| Q |
360 |
aaatgatggtggatgcgggttatggagatcgattgaaatgaccgcacctgtgatgttat |
418 |
Q |
| |
|
||| ||||| |||||||||||||||||||||| | |||| | ||||||||||| |
|
|
| T |
9708 |
aaagagcaccggatgtgggttatggagatcgattgaaacgtccgcgcttgtgatgttat |
9650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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