View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8005_high_10 (Length: 224)
Name: NF8005_high_10
Description: NF8005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8005_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 5966803 - 5966994
Alignment:
| Q |
15 |
aatatcaatgtcttcttttaaaactttcatgaagagcctccaatcaaaaatatctttgaagtcactgaaatatattagggacattatattttggaaaatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5966803 |
aatatcaatgtcttcttttaaaactttcatgaagagcctccaatcaaaaatatctttgaagtcactgaaatatattagggacattatactttggaaaatt |
5966902 |
T |
|
| Q |
115 |
ggtaacatgaggaactaagtaaacgttgatacactcacatgattgtgcaacatgagggaaatttaccttggatcagtccaaaatgaatcatg |
206 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5966903 |
ggtaacatgaggaactaaataaacgttgatacactcacatgattgtgcaatatgagggaaatttaccttggatcagtccaaaatgaatcatg |
5966994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University