View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8005_high_3 (Length: 415)

Name: NF8005_high_3
Description: NF8005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8005_high_3
NF8005_high_3
[»] chr4 (31 HSPs)
chr4 (5-399)||(6626755-6627149)
chr4 (5-206)||(6647008-6647209)
chr4 (11-399)||(6811573-6811961)
chr4 (16-190)||(6832300-6832474)
chr4 (15-205)||(6503505-6503695)
chr4 (5-205)||(6502244-6502444)
chr4 (5-206)||(6792320-6792521)
chr4 (5-165)||(6769453-6769613)
chr4 (5-188)||(6665439-6665622)
chr4 (11-395)||(6550373-6550758)
chr4 (313-399)||(6593414-6593500)
chr4 (325-398)||(6522873-6522946)
chr4 (5-189)||(6748812-6748993)
chr4 (318-399)||(6792118-6792199)
chr4 (50-177)||(4322901-4323028)
chr4 (5-92)||(6593178-6593265)
chr4 (50-208)||(4126236-4126394)
chr4 (13-167)||(6541423-6541577)
chr4 (318-399)||(6646797-6646878)
chr4 (325-399)||(6748602-6748676)
chr4 (318-395)||(6502557-6502634)
chr4 (318-399)||(6503808-6503889)
chr4 (5-165)||(6522566-6522726)
chr4 (50-185)||(4343010-4343145)
chr4 (252-395)||(6769283-6769426)
chr4 (101-206)||(4358457-4358562)
chr4 (320-399)||(6832094-6832173)
chr4 (360-399)||(6738248-6738287)
chr4 (83-154)||(7890670-7890741)
chr4 (124-169)||(4333636-4333681)
chr4 (101-158)||(6813847-6813904)
[»] scaffold0729 (2 HSPs)
scaffold0729 (5-206)||(6108-6309)
scaffold0729 (318-399)||(6430-6511)
[»] chr6 (1 HSPs)
chr6 (79-207)||(5276739-5276867)


Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 5 - 399
Target Start/End: Original strand, 6626755 - 6627149
Alignment:
Q  5 tcactttatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttcc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  6626755 tcactttatatatatggtcaactccatgctccataagtagatgtctatctctggtgataatgattattttgctacctggaccaaaccaatcccgatttcc 6626854  T
Q  105 acacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6626855 acacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattca 6626954  T
Q  205 atatgaagtatcnnnnnnncagttgttttgttgacagccataagaagtttcttttgtaaagaaacttgacctccattttgttgccaaaatgtcctgacgt 304  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6626955 atatgaagtatctttttttcagttgttttgttgacagccataagaagtttcttttgtaaagaaacttgacctccattttgttgccaaaatgtcctgacgt 6627054  T
Q  305 tttttagcaaactcttgtgttcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatatc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6627055 tttttagcaaactcttgtgttcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatatc 6627149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 6647209 - 6647008
Alignment:
Q  5 tcactttatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttcc 104  Q
    ||||||||||||||||||||||||  |||||| | |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  6647209 tcactttatatatatggtcaactctgtgctccttgagtagatgcctatctctggtagtgatgattattttgctacctggaccaaaccaatcccgatttcc 6647110  T
Q  105 acacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattca 204  Q
    |||||||||||| | ||||||||  |||| ||||| |||||||| ||||||||| ||||||| | | ||| |||||||||||||   ||| |||||||||    
T  6647109 acacaaagactttaactgctccagcttatcaacattgtcaagtacaagaagtacccttttattatgaagtttttcttttaaaatattttttcctgattca 6647010  T
Q  205 at 206  Q
    ||    
T  6647009 at 6647008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 6811961 - 6811573
Alignment:
Q  11 tatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttccacacaa 110  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||| || || ||||||||||||||||| |  |||||||| || ||| |||| |||||    
T  6811961 tatatatatggtccactccatgctccttgagtagatgtctatctcttgttgtgatgattattttgctaccggtgccaaaccattcacgacttccgcacaa 6811862  T
Q  111 agacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattcaatatga 210  Q
    ||  || ||||||||||||||||||||||||||||||| ||||||||| |||||||| || | |||||||||||||||| |||| ||  |||||||   |    
T  6811861 agcgtttagctgctccaatttattaacatcgtcaagtacaagaagtacccttttatgtcgaaatctttcttttaaaatctcttttcccaattcaattgta 6811762  T
Q  211 agtatcnnnnnnncagttgttttgttgacagccataagaagtttcttttgtaaagaaacttgacctccattttgttgccaaaatgtcctgacgtttttta 310  Q
     | |||        ||||| ||||| |||| | | ||||||||||  ||||||||||||| ||||   ||||  || ||||| |  |||||| || | ||    
T  6811761 ggaatctttgttttagttgctttgtcgacatctaaaagaagtttcgcttgtaaagaaactggaccattatttgtttcccaaactaccctgacattatcta 6811662  T
Q  311 gcaaactcttgtgttcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatatc 399  Q
    | ||||  |||| ||||||||| |||| ||  ||||||||||| || | |||||||| ||||||||||||||||  |||||||||||||    
T  6811661 gaaaacatttgtcttcaaaataaggactaatctgatcataaatggcctcggcaatggctgatttaccaatccctgtcatcccccatatc 6811573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 6832474 - 6832300
Alignment:
Q  16 atatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttccacacaaagact 115  Q
    |||| |||||||||||| | | | ||||||||||||||||| || || |||||||||||||| ||| |||||||||| ||||||||||||||||||| ||    
T  6832474 atatagtcaactccatgtttcttgagtagatgtctatctcttgttgtgatgattattttgcttcctcgaccaaaccattcccgatttccacacaaagcct 6832375  T
Q  116 tcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatca 190  Q
    | ||||| |||||||||| ||||| |||||||||||||||||| |||||||| || ||| |||||||| ||||||    
T  6832374 ttagctgatccaatttatcaacattgtcaagtataagaagtacccttttatgtcgaagtttttcttttgaaatca 6832300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 6503505 - 6503695
Alignment:
Q  15 tatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttccacacaaagac 114  Q
    |||||||||||||||||||| | | || || ||||| |  || || || |||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  6503505 tatatggtcaactccatgctgcgtgagcagttgtctgttgcttgttgtgatgattattttgctgcctggaccaaaccaatcccgatttccacacaaagcc 6503604  T
Q  115 ttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattcaa 205  Q
    || || ||||||||||||| ||||| |||||||| ||||||||| ||||||||  | || |||||||||||||| ||| | ||||||||||    
T  6503605 tttagttgctccaatttatcaacattgtcaagtagaagaagtacccttttatgttgaagcctttcttttaaaataactcttcctgattcaa 6503695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 6502244 - 6502444
Alignment:
Q  5 tcactttatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttcc 104  Q
    ||||| ||| |||||||||||||||||||||| | || ||||||||||  || || || ||||||||||| || ||||| ||||||||||||||| ||||    
T  6502244 tcactctatgtatatggtcaactccatgctccttgagcagatgtctattgcttgttgtgatgattatttttctgcctgggccaaaccaatcccgacttcc 6502343  T
Q  105 acacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattca 204  Q
    |||||||| ||| || ||||||||||| | ||||| || ||||| ||||||||| ||||||||  | ||||||||||||||||| | | | |||||||||    
T  6502344 acacaaagcctttagttgctccaatttgtcaacattgtaaagtagaagaagtacccttttatgttgaagtctttcttttaaaataattcttcctgattca 6502443  T
Q  205 a 205  Q
    |    
T  6502444 a 6502444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 6792521 - 6792320
Alignment:
Q  5 tcactttatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttcc 104  Q
    ||||| |||||||||||||||||||||||||  | ||||||||||||||| | ||||| ||||||||||| |||||||  |||||||| | |||| |||     
T  6792521 tcactctatatatatggtcaactccatgctctttgagtagatgtctatctgttgtcgtgatgattattttactacctgctccaaaccatttccgacttct 6792422  T
Q  105 acacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattca 204  Q
     || ||||  |||| |||||||||||||| ||||| |||||||| ||||||||| ||||||||  | || |||| |||||| ||| || | |||||||||    
T  6792421 gcataaagcattcaactgctccaatttatcaacattgtcaagtacaagaagtacccttttatgttgaaggctttgttttaacatctctgttcctgattca 6792322  T
Q  205 at 206  Q
    ||    
T  6792321 at 6792320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 6769613 - 6769453
Alignment:
Q  5 tcactttatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttcc 104  Q
    ||||| |||| ||||||||||||||||||||| | |||||||||||||| || ||||| |||||||||||||| |||||| ||||||| | |||| ||||    
T  6769613 tcactctataaatatggtcaactccatgctccttgagtagatgtctatccctagtcgtgatgattattttgcttcctggagcaaaccatttccgacttcc 6769514  T
Q  105 acacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacactttta 165  Q
    ||||||||  || |||||||||||||||| ||| |  || |||| ||||||||| ||||||    
T  6769513 acacaaagcatttagctgctccaatttatcaacgttttcgagtacaagaagtaccctttta 6769453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 6665622 - 6665439
Alignment:
Q  5 tcactttatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttcc 104  Q
    ||||| |||||| ||||||||||||||||||| | || |||||||||||| ||||| | |||| ||||||||| |||  ||||||||| ||  || ||||    
T  6665622 tcactctatatacatggtcaactccatgctccttgagaagatgtctatctgtggtcatgatgaatattttgctgccttcaccaaaccattcatgacttcc 6665523  T
Q  105 acacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaat 188  Q
    |||||||| ||  |||||||||||| ||| ||||| |||||||| ||||||||| ||||||||  | || || |||||||||||    
T  6665522 acacaaagcctgtagctgctccaatctataaacattgtcaagtagaagaagtacccttttatgttgaagcctgtcttttaaaat 6665439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 6550373 - 6550758
Alignment:
Q  11 tatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttccacacaa 110  Q
    ||||||||||||||| |||||||||| | || ||||||||||  || |  || |||||||||||||| |||  ||||||||| ||  ||||| |||||||    
T  6550373 tatatatatggtcaaatccatgctccttgaggagatgtctattcctagatgtgatgattattttgcttcctacaccaaaccattcaggattttcacacaa 6550472  T
Q  111 agacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattcaatatga 210  Q
    ||  || |||||||||||||||| ||||| |||||| | ||||||||  ||||| || || | ||| | |||||||||   ||| ||||||||||| | |    
T  6550473 agcatttagctgctccaatttatcaacattgtcaagaacaagaagtatccttttgtgtcgaaatctatattttaaaatttgttttcctgattcaatttta 6550572  T
Q  211 agtatcnnnnnnncagttgttttgttgacagccataagaagtttcttttgtaaagaaacttgacctccattttgttgccaaaatgtcctgacgtttttt- 309  Q
     |||||       |||||  || ||  |   | | || |||||||| ||||||| |||||||||| |  | ||||| ||||  |  | |||||||||||     
T  6550573 cgtatctttatttcagttccttggtcaatgtcaaaaataagtttctgttgtaaaaaaacttgaccactttcttgttcccaagctcccttgacgttttttg 6550672  T
Q  310 agcaaactcttgtgttcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatccccca 395  Q
    || || | |||||   ||||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  6550673 agaaagcacttgtccgcaaaatagggaccaatttgatgataaatggcttgggcaatggttgttttaccaatccctgccatccccca 6550758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 313 - 399
Target Start/End: Original strand, 6593414 - 6593500
Alignment:
Q  313 aaactcttgtgttcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatatc 399  Q
    ||||||||||||||||||||  |||||| |||||| ||||| ||||||||||||||||||||||||||||||  |||||||||||||    
T  6593414 aaactcttgtgttcaaaataaagaccaatttgatcgtaaatggcttgggcaatggttgatttaccaatccctgtcatcccccatatc 6593500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 6522873 - 6522946
Alignment:
Q  325 tcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatat 398  Q
    |||||||| |||||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||||||    
T  6522873 tcaaaataaggaccaacttgatcataaatggccttggcaatggttgatttaccaatccctaccatcccccatat 6522946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 6748993 - 6748812
Alignment:
Q  5 tcactttatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttcc 104  Q
    ||||| |||| |||||||||||  ||| |||| | ||||| ||||||||||| |||   ||||||||||||||||||  ||||||||| || ||| ||||    
T  6748993 tcactctatagatatggtcaacaacatactccttgagtagttgtctatctcttgtcaagatgattattttgctaccttcaccaaaccattcacgacttcc 6748894  T
Q  105 acacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatc 189  Q
     ||||| |  || |||||||||||||||| ||||    ||||||||| ||||||  |||||||  | ||||||||||||||||||    
T  6748893 gcacaaggcatttagctgctccaatttatcaaca---ccaagtataaaaagtacctttttatgttgaagtctttcttttaaaatc 6748812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 399
Target Start/End: Complemental strand, 6792199 - 6792118
Alignment:
Q  318 cttgtgttcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatatc 399  Q
    |||||| ||||||||  |||||| |||||||||||| |||| |||||||||||||||||||||||||  |||||||||||||    
T  6792199 cttgtgctcaaaataaagaccaatttgatcataaatggctttggcaatggttgatttaccaatccctgtcatcccccatatc 6792118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 4322901 - 4323028
Alignment:
Q  50 tatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttccacacaaagacttcagctgctccaatttattaacatcgtcaagtat 149  Q
    ||||||| || || ||||||||| | ||||||||| ||||||| |  | | ||||||||||||  || ||||| |||| |||||| |||||||||||||     
T  4322901 tatctctagttgtgatgattattctactacctggagcaaaccatttacaacttccacacaaagcatttagctggtccagtttattcacatcgtcaagtac 4323000  T
Q  150 aagaagtacacttttatgacggagtctt 177  Q
    ||||||||| |||||||||| |||||||    
T  4323001 aagaagtactcttttatgacagagtctt 4323028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 6593178 - 6593265
Alignment:
Q  5 tcactttatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaacca 92  Q
    ||||| ||||||||||||||| |||||||| | | ||||||||||||||||| || || ||||||||||||||||||  |||||||||    
T  6593178 tcactctatatatatggtcaattccatgcttcttgagtagatgtctatctcttgttgtgatgattattttgctaccttcaccaaacca 6593265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 4126236 - 4126394
Alignment:
Q  50 tatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttccacacaaagacttcagctgctccaatttattaacatcgtcaagtat 149  Q
    |||| |||||||| ||||||||| | || |||||| ||||||| |  | | ||||||||||||  || || || ||||||||||| |||||||||||||     
T  4126236 tatccctggtcgtgatgattattctactccctggagcaaaccatttacaacttccacacaaagcattgagttggtccaatttattcacatcgtcaagtac 4126335  T
Q  150 aagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattcaatat 208  Q
    |||||| || ||||||||||  |||| ||| ||||| ||   |||||||||||||||||    
T  4126336 aagaagaactcttttatgacaaagtcgttcctttaatatagatttccctgattcaatat 4126394  T

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Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 6541423 - 6541577
Alignment:
Q  13 tatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttccacacaaag 112  Q
    |||||||||||||||||||||| | |||| ||| | |||||||  || || |||||||||||||| || | |||||||||||  ||| |||||||||||     
T  6541423 tatatatggtcaactccatgctgcttaagcagacgcctatctcgtgtggtgatgattattttgctcccagcaccaaaccaatatcgacttccacacaaaa 6541522  T
Q  113 acttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatg 167  Q
      || | ||| ||||| |||| |||||||||||||| ||  ||||| ||||||||    
T  6541523 cttttaactgatccaacttatcaacatcgtcaagtacaatgagtactcttttatg 6541577  T

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Target: chr4; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 399
Target Start/End: Complemental strand, 6646878 - 6646797
Alignment:
Q  318 cttgtgttcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatatc 399  Q
    |||||| |||||||| |||||||  |||| |||||| |||| |||||||||||||||||| |||||| ||||||||||||||    
T  6646878 cttgtgctcaaaataaggaccaatctgattataaatggcttcggcaatggttgatttaccgatccctgccatcccccatatc 6646797  T

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Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 6748676 - 6748602
Alignment:
Q  325 tcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatatc 399  Q
    |||||||||||||||| |||||||||||| ||||  ||||| | ||||||||||| |||| ||||||||||||||    
T  6748676 tcaaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatc 6748602  T

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Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 6502557 - 6502634
Alignment:
Q  318 cttgtgttcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatccccca 395  Q
    |||||| ||||||||||||||||  |||| | |||| |||||||||||||||||||||| |||||||  |||||||||    
T  6502557 cttgtgctcaaaatagggaccaatctgattaaaaatggcttgggcaatggttgatttactaatccctgacatccccca 6502634  T

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Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 6503808 - 6503889
Alignment:
Q  318 cttgtgttcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatatc 399  Q
    |||||| | |||| |||||||||  |||| |||||| |||| |||||||||||||||||||||||||  |||||||||||||    
T  6503808 cttgtgcttaaaaaagggaccaatctgattataaatggcttcggcaatggttgatttaccaatccctgtcatcccccatatc 6503889  T

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Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 6522566 - 6522726
Alignment:
Q  5 tcactttatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttcc 104  Q
    ||||| ||||||||||||| |||||||| | | |||||| ||  |||||||| || || |||||||||||||||||| |||||||| | |  |||  | |    
T  6522566 tcactctatatatatggtcgactccatgtttcttaagtacatacctatctcttgttgtgatgattattttgctaccttgaccaaactattggcgacgttc 6522665  T
Q  105 acacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacactttta 165  Q
    ||| ||||  |  |||||||||| ||||| ||||| ||||| |||||||||| | ||||||    
T  6522666 acataaagtatctagctgctccattttatcaacattgtcaaatataagaagtgccctttta 6522726  T

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Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 4343145 - 4343010
Alignment:
Q  50 tatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttccacacaaagacttcagctgctccaatttattaacatcgtcaagtat 149  Q
    |||| ||||| || ||||||||| | || |||||| |||||||    ||| ||||||||||||  || || || ||||||||||| |||||||||||||     
T  4343145 tatccctggttgtgatgattattctactccctggagcaaaccatctacgacttccacacaaagcatttagttgatccaatttattcacatcgtcaagtac 4343046  T
Q  150 aagaagtacacttttatgacggagtctttcttttaa 185  Q
    |||||| || |||||||||| ||| ||||| |||||    
T  4343045 aagaagaactcttttatgacagagcctttcctttaa 4343010  T

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Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 395
Target Start/End: Complemental strand, 6769426 - 6769283
Alignment:
Q  252 tttcttttgtaaagaaacttgacctccattttgttgccaaaatgtcctgacgttttttagcaaactcttgtgttcaaaatagggaccaacttgatcataa 351  Q
    ||||| ||||||||||||||||||||||||| ||| ||||| ||| | || ||| || || ||    ||||  ||||||||||||| || ||||| | ||    
T  6769426 tttctcttgtaaagaaacttgacctccatttcgttcccaaactgttccgatgttattgaggaagtaattgtactcaaaatagggactaatttgattaaaa 6769327  T
Q  352 atagcttgggcaatggttgatttaccaatccctcccatccccca 395  Q
    || | |||||||||||| | |||||||||||||  |||||||||    
T  6769326 atggattgggcaatggtagttttaccaatccctgtcatccccca 6769283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 4358562 - 4358457
Alignment:
Q  101 ttccacacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctga 200  Q
    ||||||||||||  || || || ||||||||||| ||||||||||||| || |||||| ||||||||||  |||||||| ||||| ||   ||| |||||    
T  4358562 ttccacacaaagcatttagttggtccaatttattgacatcgtcaagtacaataagtactcttttatgacacagtctttcctttaatatagattttcctga 4358463  T
Q  201 ttcaat 206  Q
    ||||||    
T  4358462 ttcaat 4358457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 6832173 - 6832094
Alignment:
Q  320 tgtgttcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatatc 399  Q
    |||| |||||||||||||||| ||||| | | || || ||| ||||| |||||||||||||||||  |||||||||||||    
T  6832173 tgtgctcaaaatagggaccaatttgattacatatggcatggacaatgcttgatttaccaatccctggcatcccccatatc 6832094  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 6738287 - 6738248
Alignment:
Q  360 ggcaatggttgatttaccaatccctcccatcccccatatc 399  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  6738287 ggcaatggttgatttaccaatccctgtcatcccccatatc 6738248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 7890670 - 7890741
Alignment:
Q  83 gaccaaaccaatcccgatttccacacaaagacttcagctgctccaatttattaacatcgtcaagtataagaa 154  Q
    ||||||||||||| ||||  ||||||||||  |||| ||| ||||||||||| ||| ||||||||| |||||    
T  7890670 gaccaaaccaatcacgatcaccacacaaagcattcaactgttccaatttattcacaccgtcaagtacaagaa 7890741  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 4333681 - 4333636
Alignment:
Q  124 tccaatttattaacatcgtcaagtataagaagtacacttttatgac 169  Q
    ||||||||||||||||||||||||| || ||| || ||||||||||    
T  4333681 tccaatttattaacatcgtcaagtacaataagaactcttttatgac 4333636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 6813904 - 6813847
Alignment:
Q  101 ttccacacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtac 158  Q
    |||||||||||| ||| ||||||||||||| ||| ||||| ||||| | |||||||||    
T  6813904 ttccacacaaagcctttagctgctccaattcattcacatcatcaagcacaagaagtac 6813847  T

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Target: scaffold0729 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 6108 - 6309
Alignment:
Q  5 tcactttatatatatggtcaactccatgctccataagtagatgtctatctctggtcgtaatgattattttgctacctggaccaaaccaatcccgatttcc 104  Q
    ||||| |||||||||||||||||||||||||  | ||||||||||||||| | ||||| ||||||||||| |||||||  |||||||| | |||| |||     
T  6108 tcactctatatatatggtcaactccatgctctttgagtagatgtctatctgttgtcgtgatgattattttactacctgctccaaaccatttccgacttct 6207  T
Q  105 acacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtctttcttttaaaatcactttccctgattca 204  Q
     || ||||  |||| |||||||||||||| ||||| |||||||| ||||||||| ||||||||  | || |||| |||||| ||| || | |||||||||    
T  6208 gcataaagcattcaactgctccaatttatcaacattgtcaagtacaagaagtacccttttatgttgaaggctttgttttaacatctctgttcctgattca 6307  T
Q  205 at 206  Q
    ||    
T  6308 at 6309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 6430 - 6511
Alignment:
Q  318 cttgtgttcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatatc 399  Q
    |||||| ||||||||  |||||| |||||||||||| |||| |||||||||||||||||||||||||  |||||||||||||    
T  6430 cttgtgctcaaaataaagaccaatttgatcataaatggctttggcaatggttgatttaccaatccctgtcatcccccatatc 6511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 5276867 - 5276739
Alignment:
Q  79 cctggaccaaaccaatcccgatttccacacaaagacttcagctgctccaatttattaacatcgtcaagtataagaagtacacttttatgacggagtcttt 178  Q
    |||| |||||||||||  ||| ||||||||||||  | || ||||||||| | ||  |||||||||||||| | || ||| || |||||||| ||||| |    
T  5276867 cctgaaccaaaccaattacgacttccacacaaagcatccaactgctccaactcatcgacatcgtcaagtatgataaatactctcttatgacgaagtctat 5276768  T
Q  179 cttttaaaatcactttccctgattcaata 207  Q
    | ||||| || ||||| ||||| ||||||    
T  5276767 cctttaatattacttttcctgaatcaata 5276739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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