View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8005_high_6 (Length: 332)
Name: NF8005_high_6
Description: NF8005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8005_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 2964819 - 2964519
Alignment:
| Q |
18 |
gatttggtgcatttgtctaaattttac---cattcattgttagaggttgttcaaacataattttcaactttgcatgtataagcactacattccccaataa |
114 |
Q |
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| T |
2964819 |
gatttggtgcacttgtataaattttcctatcatttattgttagaggttgatcgaacataattttcaactttgcat-----------acattccccaataa |
2964731 |
T |
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| Q |
115 |
taaactttgaaaaggcacagctccacaccctcgatcaactcttcacataagaccctcactgcatccagactattttactattttgtttgtgtttgt---- |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2964730 |
taaactttgaaaaggcacagctccacaccctcgatcaactcttcacataagaccctcactgcatccagactattttactattttgtttgtgtttgtgttt |
2964631 |
T |
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| Q |
211 |
--tcataagtcggaattagaataagaaaacataaaggaagtgttatgttatgttcttgaaaaaatgcaattgcttttcacttggagacaaaattaaacat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2964630 |
gttcataagtcggaattagaataagaaaacataaaggaagtgttatgttatgttcttgaaaaaatgcaattgcttttcacttggagacaaaattaaacat |
2964531 |
T |
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| Q |
309 |
caaatcaatatt |
320 |
Q |
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|||||||||||| |
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| T |
2964530 |
caaatcaatatt |
2964519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 2978812 - 2978759
Alignment:
| Q |
18 |
gatttggtgcatttgtctaaattttac---cattcattgttagaggttgttcaa |
68 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
2978812 |
gatttggtgcatttgtctaaattttaccatcattcattgttagaggttcttcaa |
2978759 |
T |
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