View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8005_low_1 (Length: 674)
Name: NF8005_low_1
Description: NF8005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8005_low_1 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 589; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 59 - 663
Target Start/End: Original strand, 44949080 - 44949684
Alignment:
| Q |
59 |
tcattcagtagtaatcaactcactcagaaatccaaccatttctgataatagacacatgctcctgtagagacaacgccatcgggtgaacaaaagctcattc |
158 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44949080 |
tcattcagtagtaatcaactcattcagaaatccaaccatttctgataatagacacatgctcctggagagacaacgccatcgggtgaacaaaagctcattc |
44949179 |
T |
|
| Q |
159 |
gctcacaagaaaaacatggaaaggaagtaaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaactgg |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949180 |
gctcacaagaaaaacatggaaaggaagtaaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaactgg |
44949279 |
T |
|
| Q |
259 |
aataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgact |
358 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949280 |
aataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgact |
44949379 |
T |
|
| Q |
359 |
tcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagag |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949380 |
tcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagag |
44949479 |
T |
|
| Q |
459 |
catctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatc |
558 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949480 |
catctataaaacccgtatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatc |
44949579 |
T |
|
| Q |
559 |
tttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttctcta |
658 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949580 |
ttcgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttctcta |
44949679 |
T |
|
| Q |
659 |
ttcat |
663 |
Q |
| |
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||||| |
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| T |
44949680 |
ttcat |
44949684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 86 - 594
Target Start/End: Original strand, 6469968 - 6470464
Alignment:
| Q |
86 |
aaatccaaccatttctgataatagacacatgctcctgtagagacaacgccatcgggtgaacaaaagctcattcgctcacaagaaaaacatggaaaggaag |
185 |
Q |
| |
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|||||||||||||||||| |||| ||||||| | || ||||||||| ||||| | ||||||||||||||| || | |||||||||||||||||||| || |
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| T |
6469968 |
aaatccaaccatttctgaaaatacacacatgttgttggagagacaacaccatccgatgaacaaaagctcatccgttgacaagaaaaacatggaaagggag |
6470067 |
T |
|
| Q |
186 |
taaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaactggaataaatgcaaaatccccatatccagc |
285 |
Q |
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| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
6470068 |
tcgagtcagcagatttcttttc------------acccttgcttttgcatatgtaacaagttttgccaacaggaatagatgcaaaatccccatatccagt |
6470155 |
T |
|
| Q |
286 |
acttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctcttttta |
385 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||| ||| |||||| | ||| ||||| |
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| T |
6470156 |
acttgtcatctgcattatctcatcatctaaaaccaaagtttgtaaaatctcttctatttgttctcccgtgacttgagttgtgaagaccccactcctttta |
6470255 |
T |
|
| Q |
386 |
atccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcc |
485 |
Q |
| |
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| ||||||||||||||||||||||||||||||| | | || ||||||||| || |||| | ||||||||| ||||||||| || ||||||| ||| |
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| T |
6470256 |
acccactccaaacatccatcacatgtggaaactctctccaatgaaatgcattgcaggcacgtttgctttagagcgtctataaaaaccgtatcaagactcc |
6470355 |
T |
|
| Q |
486 |
catcactataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctt |
585 |
Q |
| |
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| ||||| ||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||||| ||||||||| |||| ||||| |||||| |
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| T |
6470356 |
cttcactgtaaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctt |
6470455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 301 - 502
Target Start/End: Original strand, 44943533 - 44943734
Alignment:
| Q |
301 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |
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| T |
44943533 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagaattgaagattccactctttttaatccactccaaacat |
44943632 |
T |
|
| Q |
401 |
ccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaat |
500 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| ||| || ||||||| |||||||||| |||||||| |
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| T |
44943633 |
ccattacatgtggaaactttctgcatgaaaatgcatttcaagtacacattctttagagtatctatcaaaaccgtatcaagtttcccatcaccataaaaat |
44943732 |
T |
|
| Q |
501 |
gc |
502 |
Q |
| |
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|| |
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| T |
44943733 |
gc |
44943734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 550 - 612
Target Start/End: Original strand, 44943742 - 44943804
Alignment:
| Q |
550 |
ctttatatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
612 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44943742 |
ctttatacctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
44943804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 75 - 594
Target Start/End: Complemental strand, 419727 - 419220
Alignment:
| Q |
75 |
aactcactcagaaatccaaccatttctgataatagacacatgctcctgtagagacaacgccatcgggtgaacaaaagctcattcgctcacaagaaaaaca |
174 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||| | || ||||||||| || || | ||||||||||||||| || | |||||||||||| |
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| T |
419727 |
aactcattcaaaaatccaaccatttctgataatagacacatgttgttggagagacaacaccgtctgttgaacaaaagctcatccgttgacaagaaaaaca |
419628 |
T |
|
| Q |
175 |
tggaaaggaagtaaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaactggaataaatgcaaaatcc |
274 |
Q |
| |
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|||||||| ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
419627 |
tggaaagggagtcgagtcaacagatttcttttc------------acccttgcttttgcatatgtaacaagttttgccaacgggaatagatgcaaaatcc |
419540 |
T |
|
| Q |
275 |
ccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagattt |
374 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||| ||||||| ||| |||||| |
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|
| T |
419539 |
ccatatccagtacttgtcatctgcatgatctcatcgtctaaaaccaaagtttgcaaaatctcttctatttggtctcccgtgacttgagttgtgaagaccc |
419440 |
T |
|
| Q |
375 |
cgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccat |
474 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||| | || | ||||||||| ||||||| ||||||||||||||||||||| || | |
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| T |
419439 |
cactctttttaacccactccaaacatccatcacatgtggaaactctctgtaatgaaatgcattgcaagcacgttttctttagagcatctataaaaaccgt |
419340 |
T |
|
| Q |
475 |
atcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgtta |
574 |
Q |
| |
|
|||||| |||| || || ||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||||| ||||||||| |||| | |
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| T |
419339 |
atcaagactcccttcgctgtaaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaa |
419240 |
T |
|
| Q |
575 |
ggaacttcctttaccatact |
594 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
419239 |
ggaagttcctttaccatact |
419220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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