View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8005_low_12 (Length: 255)
Name: NF8005_low_12
Description: NF8005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8005_low_12 |
 | |
|
| [»] scaffold0640 (1 HSPs) |
| |
|
| [»] scaffold2156 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
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Alignment Details
Target: scaffold0640 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 4856 - 5100
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4856 |
gtgagatgaatctttgtattctagaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaa |
4955 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4956 |
catcacacgttcatctaaacttgtctaccttgacttagcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
5055 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5056 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
5100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 474 - 231
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
474 |
gtgagatgaatctttgtattctagaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaa |
375 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
374 |
catcacacgttcatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
275 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
274 |
tcctt-aaatatctcatccttattgggattgatcttcgtaaggaa |
231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 31)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 17941200 - 17941436
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || | ||||| ||||||||||| | ||| | ||||| || |||||| ||||| || ||||||||| |
|
|
| T |
17941200 |
gtgagatgaatctttgtattcttgaacttgagtttctcagttatttggatttgagtgataataaatttgatgtgataagaattccatccattcaacacaa |
17941299 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
|||||||| || |||||||||||| ||||| |||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
17941300 |
catcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttcacatggataatcttcattggctttctccattttct |
17941399 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttc |
247 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |
|
|
| T |
17941400 |
accttgaaatatctccgccttagtggcattgatcttc |
17941436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 31 - 255
Target Start/End: Complemental strand, 24493942 - 24493721
Alignment:
| Q |
31 |
ctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtttatctaaac |
130 |
Q |
| |
|
|||||||||||| || | ||||||||||| |||||| | || |||||||| | ||||| ||||| || |||| |||||||||||| || |||||||| |
|
|
| T |
24493942 |
ctagaacttgagtttcttagttacttggacttgagcgataacgattttgatttgataagtattccaaccattcaaaacaacatcacacattcatctaaac |
24493843 |
T |
|
| Q |
131 |
ttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatcct |
230 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| || ||||||| || ||||||||||||| ||| |
|
|
| T |
24493842 |
ttgtctaccttgacttatcccccctcagctttggta---ctcttcacatggataatcttcattggcttcctccactttcttcgttgaaatatctcaacct |
24493746 |
T |
|
| Q |
231 |
tagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
|||||| || ||||||||| ||||| |
|
|
| T |
24493745 |
tagtggaatcgatcttcgtgaggaa |
24493721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 18115421 - 18115671
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||| || |||||| ||||| || ||||||||| |
|
|
| T |
18115421 |
gtgagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagctcaaatgattttgatgtgataagatttccatccattcaacacaa |
18115520 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataa------aactcttcacatggataatcttcattggctttcttca |
204 |
Q |
| |
|
| |||||| || |||||| ||| || ||||||||||||||||| || || | || | |||||||||||||||||||| |||||||||| || |
|
|
| T |
18115521 |
cctcacacattcatctaaccttttccaccttgacttatcccccttccgttatcatgatcacggtcctcttcacatggataatcttggttggctttctcca |
18115620 |
T |
|
| Q |
205 |
ctttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
| ||| ||||||||||||||| ||||||||| ||| |||||| ||||||| |
|
|
| T |
18115621 |
cattcttccttgaaatatctcgaccttagtggaattcatcttcataaggaa |
18115671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 19460988 - 19461238
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||||||||||||||| ||||| ||||| || |||||| ||||| || ||||||||| |
|
|
| T |
19460988 |
gtgagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagtctgaatgaatttgatgtgataagatttccatccattcaacacaa |
19461087 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataa------aactcttcacatggataatcttcattggctttcttca |
204 |
Q |
| |
|
|||||||| || |||||| ||| |||||||||||||||||||| || || | || | |||||||||||||||||||| |||||||||| || |
|
|
| T |
19461088 |
catcacacattcatctaaccttttctaccttgacttatcccccttccgttatcatgatcacggtcctcttcacatggataatcttggttggctttctcca |
19461187 |
T |
|
| Q |
205 |
ctttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
| ||| ||||||||||||||| ||||||||| ||| |||||| ||||||| |
|
|
| T |
19461188 |
cattcttccttgaaatatctcgaccttagtggaattcatcttcataaggaa |
19461238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 25462506 - 25462747
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| || | |||||||||||||| || | ||||| ||| || | ||||| |||||| | ||||||||| |
|
|
| T |
25462506 |
gtgagatgaatctatgtgttctagaacttgagtttctcagttacttggatttaagtgataatgaatttaacatcataagtattccagcctttcaacacaa |
25462605 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
|||||||| || ||||||||||| ||| |||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||| || | || |
|
|
| T |
25462606 |
catcacacattcatctaaacttgactatcttgacttatccccgctcaccct---taacactcttcacatggataatcttcattggctttctccattatct |
25462702 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||| |||||||||| ||| | || |||||||||| ||||||| |
|
|
| T |
25462703 |
tccttaaaatatctcaacctcaatgcaattgatcttcataaggaa |
25462747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 18015562 - 18015800
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
||||||||||| |||||||| |||||||||| || | ||||||||||||||||| | |||||| ||||| || ||||| ||||| || |||| |||| |
|
|
| T |
18015562 |
gtgagatgaatttttgtattttagaacttgaatttcttagttacttggatttgagtttcaatgaatttgatgtgataagtattccatccattcaaaacaa |
18015661 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
|||||||| || ||||| ||| |||||||||||||| ||||| || |||| |||||||||||||||||||| |||||||||| ||| ||| |
|
|
| T |
18015662 |
catcacacattcctctaaccttttctaccttgacttacacccccccactttt------actcttcacatggataatctggattggctttcaccacattcg |
18015755 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
|| ||||||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
18015756 |
tcgttgaaatatctcaaccttagttggattgatcttcataaggaa |
18015800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 18102898 - 18103136
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||| || | | ||||||||||||||||| ||| ||||||| || |||||| ||||| || ||||||||| |
|
|
| T |
18102898 |
gtgatatgaatctttgtattcttggacttgagtttctcaattacttggatttgagctggaatcattttgatgtgataagaattccatccattcaacacaa |
18102997 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| | | || | ||| |||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
18102998 |
catcacacattcatctaaacttgtctaccttgacttatcctacaac------tatcctattctgcacatggatagtcttcactggctttctccactttct |
18103091 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||| |||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
18103092 |
tccttaaaatatctcaaccttagttggattgatcttcataaggaa |
18103136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 18143710 - 18143939
Alignment:
| Q |
17 |
tgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcac |
116 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||||||||||| | |||||||||||| | |||||| ||||| || ||||||||||||||| |
|
|
| T |
18143710 |
tgaatctttgtattctagaacttgagtttcttagttacttggatttgagattcaatgattttgatatgataagaattccatccattcaacacaacatcac |
18143809 |
T |
|
| Q |
117 |
acgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttg |
216 |
Q |
| |
|
|| || ||||||||||||||||||||||||||| | | || || ||| | |||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
18143810 |
acattcctctaaacttgtctaccttgacttatcctacagctttgtt------actggt---atggataatcttgattggctttctccactttcttcctta |
18143900 |
T |
|
| Q |
217 |
aaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||| ||||||| |
|
|
| T |
18143901 |
aaatatctcaacctcagtggaattgatcttcataaggaa |
18143939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 19392593 - 19392732
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || | |||||||||||||||||| |||||||||||||| |||||| |||||| || ||||| ||| |
|
|
| T |
19392593 |
gtgagatgaatctttgtattctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaa |
19392692 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcc |
150 |
Q |
| |
|
|||||| | || ||||||||||| |||||||||||||||| |
|
|
| T |
19392693 |
catcacgcattcatctaaacttgcctaccttgacttatcc |
19392732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 19333453 - 19333715
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||||||||||||||| |||| |||||||| |||| | ||||| || || |||||| |
|
|
| T |
19333453 |
gtgagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagtctgaatgtatttgacgtgataataattccatccattccacacaa |
19333552 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctca------tttttgat------------aaaactcttcacatggataatcttcat |
192 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||||||| ||||| || | ||| |||||||| |||||||||| ||||||| |
|
|
| T |
19333553 |
catcacacattcatctaaacttgtataccttgacttatccctcctcaacaaatttgtcgatttagaaaaaaagaaaactctgcacatggatagtcttcat |
19333652 |
T |
|
| Q |
193 |
tggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
19333653 |
tggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaa |
19333715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 16676669 - 16676916
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | | ||||||||||||||||| ||||| |||||| | |||||| ||||| || |||||| || |
|
|
| T |
16676669 |
gtgagatgaatctttgtattctagaacttgagtttctaatttacttggatttgagctggaatgaatttgacctaataagaattccatccattcaacaaaa |
16676768 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttca------catggataatcttcattggctttcttca |
204 |
Q |
| |
|
| |||||| | |||||| ||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||| | | |
|
|
| T |
16676769 |
cctcacacatgcatctaaccttgtctaccttgacttatcctccctcggccttgat---actcttcatataagtatggataatcttcattggctttttata |
16676865 |
T |
|
| Q |
205 |
ctttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||| |||||||| |||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
16676866 |
ctttcttccttgaagtatctcgaccttagtggacttgatcttcataaggaa |
16676916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 14896934 - 14896701
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||| || | |||||||| |||||||| ||| ||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
14896934 |
gtgagatgagtctttgtattctcgaactggagtttctcagttacttagatttgagtatgaatcattttgatgtgataagtattccagtcactcaacacaa |
14896835 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
|||||||| || ||||| ||| ||||||||||||||| || ||| | | | ||| ||||||||||||||| ||||||||||| ||| ||| |
|
|
| T |
14896834 |
catcacacattcatctagccttttctaccttgacttat---ccttcaacgaaggtcctaatctgcacatggataatcttgattggctttctccacattct |
14896738 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttc |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14896737 |
tccttgaaatatctcatccttagtggaattgatcttc |
14896701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 19375150 - 19375362
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || | ||||||||||||||||| | |||||| |||||||| |||||| |||| || ||||||||| |
|
|
| T |
19375150 |
gtgagatgaatctttatattctagaacttgagtttctcagttacttggatttgagtttcaatgaatttgacgtgataagaattccgtccattcaacacaa |
19375249 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
| |||||| || |||||| ||| | | ||||||||||| || ||| | | ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19375250 |
cttcacacattcatctaaccttttgttccttgacttat---ccttcaactacagtcctactctgcacatggataatcttcaatggctttcttcactttct |
19375346 |
T |
|
| Q |
211 |
tccttgaaatatctca |
226 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19375347 |
tccttgaaatatctca |
19375362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 18146286 - 18146519
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || | | ||||||||||||||| | ||| ||||||| | |||||| ||||| || ||||||||| |
|
|
| T |
18146286 |
gtgagatgaatctttgtattcttgaacttgagtttcttaattacttggatttgagtgataattattttgatatgataagaattccatccattcaacacaa |
18146385 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
||||||| | ||||||| ||| | ||||||||||||| || | | | | | ||||| |||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18146386 |
tatcacacatatatctaaccttttgtaccttgacttat---cctttaactacggtcctactctgcacatgcataatcttcattggctttctccactttct |
18146482 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttc |
247 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
18146483 |
tccttgaaatatctctcccttagtgagattgatcttc |
18146519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 18022264 - 18022499
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| || | ||||| ||||||||||| | ||||| ||||| || |||||| ||||| | ||||||||| |
|
|
| T |
18022264 |
gtgagctgaatctttgtattcttgaacttgagtttcttagttatttggatttgagtcataatgaatttgatgtgataagaattccatctattcaacacaa |
18022363 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
|||||||| | ||||||| || ||||||||||||||||| ||| || | ||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
18022364 |
catcacacactcatctaaatttttctaccttgacttatcc---------tttaatgatggtcttcacatagataatcttgactggctttcttcactttct |
18022454 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||| ||||||| |
|
|
| T |
18022455 |
tccttgaaatatctcgacctcagtggacttgatcttcataaggaa |
18022499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 18164618 - 18164853
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||| ||||||||||||| ||||||||||| || |||||| || || | ||||||||| |
|
|
| T |
18164618 |
gtgagatgaatctttgtattctagaacttgagtttctcagtcacttggatttgagtcttaatgattttgatgtgataagaattacatcaattcaacacaa |
18164717 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
| |||||| || |||||||||||||||||||||||||||| | | | || ||| | |||||||||||| ||||||||||| ||||||| |
|
|
| T |
18164718 |
cttcacacattcatctaaacttgtctaccttgacttatccaacagcttaatt------actagt---atggataatcttgattggctttctccactttct |
18164808 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
18164809 |
tccttgaaatatctcaaccttagttttattgatcttcataaggaa |
18164853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 17728224 - 17727983
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || | ||||||||||||||||||| |||| | ||||| | |||||| ||||| || ||| ||||| |
|
|
| T |
17728224 |
gtgagatgaatctttgtattcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaa |
17728125 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
||||||||||| ||| || ||| | ||| |||||||| || | | | | | |||||| |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
17728124 |
catcacacgttcatcgaaccttttgtacactgacttat---ccttaaatcaaggtccaactctgcacatggatagtcttcattggctttctccactttct |
17728028 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||| ||||||||| ||| | ||| |||||||||| ||||||| |
|
|
| T |
17728027 |
tccttacaatatctcaacctcaatggaattgatcttcataaggaa |
17727983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 19029453 - 19029212
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || | ||||||||||||||||||| |||| | ||||| | |||||| ||||| || ||| ||||| |
|
|
| T |
19029453 |
gtgagatgaatctttgtattcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaa |
19029354 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
||||||||||| ||| || ||| | ||| |||||||| || | | | | | |||||| |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
19029353 |
catcacacgttcatcgaaccttttgtacactgacttat---ccttaaatcaaggtccaactctgcacatggatagtcttcattggctttctccactttct |
19029257 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||| ||||||||| ||| | ||| |||||||||| ||||||| |
|
|
| T |
19029256 |
tccttacaatatctcaacctcaatggaattgatcttcataaggaa |
19029212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 19436336 - 19436474
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || | ||||||||||||||||| ||||||||||| || |||||| || || || ||||||||| |
|
|
| T |
19436336 |
gtgagatgaatctttgtattctaaaacttgagtttcttagttacttggatttgagtgtgaatgattttgatgtgataagaatttcatccattcaacacaa |
19436435 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatc |
149 |
Q |
| |
|
||||||| || |||||||||| |||||||||||||||| |
|
|
| T |
19436436 |
tatcacacattcatctaaacttctctaccttgacttatc |
19436474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 19399176 - 19399414
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || | ||||||||||||||||| | ||||| ||| | || |||||| ||||| || ||||||||| |
|
|
| T |
19399176 |
gtgagatgaatctctgtattctagaacttgagtttctcagttacttggatttgagtgagaatgaatttcatgtgataagaattccatccattcaacacaa |
19399275 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
||||||| || |||||||||||| || ||||||| ||| | || | ||||| || |||||||||||| ||||||||||| ||||||| |
|
|
| T |
19399276 |
tatcacacattcatctaaacttgtagactttgacttctcctggaac------tatcagactctgcaaatggataatcttgattggctttctccactttct |
19399369 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||| |||||||||| ||||| | |||||||||||| ||||||| |
|
|
| T |
19399370 |
tccttaaaatatctcaaccttaattggattgatcttcataaggaa |
19399414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 19413660 - 19413797
Alignment:
| Q |
13 |
gagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||| |||||| | |||||| ||||| | | ||||||| | |
|
|
| T |
19413660 |
gagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagccacaattattttggtgagataagaattccaactattaaacacaata |
19413759 |
T |
|
| Q |
113 |
tcacacgtttatctaaacttgtctaccttgacttatcc |
150 |
Q |
| |
|
|||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
19413760 |
tcacacattcatctaaacttgtttaccttgacttatcc |
19413797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 19350865 - 19351004
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | |||||||||| |||||| | ||| ||||||| || |||| ||||| || |||| | || |
|
|
| T |
19350865 |
gtgagatgaatctttgtattctagaacttgagtttctcagttacttgggtttgagtgagaatcattttgatgtgataactattccatccattcaaaaaaa |
19350964 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcc |
150 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
19350965 |
catcacacattcctctaaacttgtctaccttgacttatcc |
19351004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 19419451 - 19419683
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| || | ||||||||||||||||| | ||| | ||| | || |||||| ||||| || ||||||||| |
|
|
| T |
19419451 |
gtgagatgaatctttgtatttttgaacttgagtttcttagttacttggatttgagtcataataaatttaatgtgataagaattccatccattcaacacaa |
19419550 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
|||||||| || |||||| ||||| | |||||||||| || ||| || |||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
19419551 |
catcacacattcatctaaccttgtgaaacttgacttat---ccttcaactt---------tcttcacatgtataatcttgattggctttctccactttct |
19419638 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||| |||||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
19419639 |
tccttaaaatatctcaacctcggtggaattgatcttcataaggaa |
19419683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 18107908 - 18108136
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||| || |||||| || | ||||| || |||||||||| ||||||||||| || |||||| ||||| || ||||||||| |
|
|
| T |
18107908 |
gtgagatgaatctttgtattcttgaccttgagtttctcagttatttagatttgagctggaatgattttgatgtcataagaattccatccattcaacacaa |
18108007 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
||||||| || |||||| ||| ||||||||||||| || | ||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
18108008 |
tatcacacattcatctaacctttcgcaccttgacttatcagccttt-tttttgataaaac---------------tcttcattggctttcttcacattct |
18108091 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||||| ||||||| |
|
|
| T |
18108092 |
tccttgaaatatctcagccttggtggagttgatcttcataaggaa |
18108136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 19380361 - 19380599
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaa |
110 |
Q |
| |
|
|||||||||||||||||||||| |||||| || || | ||||||||||||||||| | ||| ||||||| || |||||| ||||| || |||||| || |
|
|
| T |
19380361 |
gtgagatgaatctttgtattcttgaacttaagtttcttagttacttggatttgagtgaaaataattttgatgtgataagaattccatccattcaacaaaa |
19380460 |
T |
|
| Q |
111 |
catcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttca |
210 |
Q |
| |
|
||| |||| || ||||| ||| | ||||||||||||||| | || || |||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
19380461 |
cattacacattcatctatccttttgcaccttgacttatcccac------ttatatggtcctctgcacatggataatcttgattggctttctccactttct |
19380554 |
T |
|
| Q |
211 |
tccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||| |||||||||| ||| ||| ||| |||||| ||||||| |
|
|
| T |
19380555 |
tccttaaaatatctcaacctcgatggaatttatcttcataaggaa |
19380599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 19413817 - 19413890
Alignment:
| Q |
182 |
ataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
|||||||||||||||||| | ||||||| || ||||||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
19413817 |
ataatcttcattggctttatccactttcttcgttgaaatatctcacccttagttggattgatcttcataaggaa |
19413890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 17949438 - 17949516
Alignment:
| Q |
169 |
actcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttc |
247 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||| ||||| || ||||||| ||| |||| |||||||||| |
|
|
| T |
17949438 |
actctgcacatggataatcttcattggctttctccactttcttccttaaattatctcaacctcggtggaattgatcttc |
17949516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 19392764 - 19392846
Alignment:
| Q |
173 |
ttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
|||| ||||||| |||| ||||||||||| ||||||| || |||||||||||| |||| ||||| |||||||||| ||||||| |
|
|
| T |
19392764 |
ttcaaatggatagtcttgattggctttctccactttcttcattgaaatatctcttcctaagtggaattgatcttcataaggaa |
19392846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 19436490 - 19436574
Alignment:
| Q |
171 |
tcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||| |||||| |||||||| ||||||||||||| ||||| ||||| |||||||||| ||||| || |||||||||| ||||||| |
|
|
| T |
19436490 |
tctgcacatgaataatcttgattggctttcttccctttcttccttaaaatatctcaaccttactgaaattgatcttcataaggaa |
19436574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 19351023 - 19351100
Alignment:
| Q |
178 |
atggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||| |||||||| ||||||||||| ||||||| ||| | |||||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
19351023 |
atgaataatcttgattggctttctccactttcttccataaaatatctcaacctcggtggaattgatcttcataaggaa |
19351100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 19424231 - 19424304
Alignment:
| Q |
173 |
ttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatctt |
246 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || ||| | |||| ||||||||| ||||||||| |
|
|
| T |
19424231 |
ttcacatggataatcttgattggctttcttcactttcttcgttggagaatctttaccttagtggaattgatctt |
19424304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 13667415 - 13667174
Alignment:
| Q |
14 |
agatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacat |
113 |
Q |
| |
|
|||||||||||||||||||||||||| || || | || || ||||||||||| | ||||| ||||| || |||| | || || || |||||||||||| |
|
|
| T |
13667415 |
agatgaatctttgtattctagaacttaagtttctcagctatttggatttgagtcataatgaatttgatgtgataaaaatttcatccattcaacacaacat |
13667316 |
T |
|
| Q |
114 |
cacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatcc |
213 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||| || || ||||||||| | ||||||||| ||||||||||||||| ||||| || |||| ||| |
|
|
| T |
13667315 |
cacaaattcatctaaacttgtctaccttgacttatccgcctacaattttgataatattcttcacattgataatcttcattggttttctccattttcttcc |
13667216 |
T |
|
| Q |
214 |
ttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||| ||||||| |
|
|
| T |
13667215 |
ttgaaatatctccggtttaatggcattgatcttcataaggaa |
13667174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 2509634 - 2509680
Alignment:
| Q |
185 |
atcttcattggctttcttcactttcatccttgaaatatctcatcctt |
231 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||||||| |||| |
|
|
| T |
2509634 |
atcttcattggctttctccactttcttccttaaaatatctcaacctt |
2509680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 15531973 - 15532057
Alignment:
| Q |
171 |
tcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaa |
255 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||| ||||||| |
|
|
| T |
15531973 |
tcttcacatggataatcttgattggctttctccactttcatccttgaaatatctcaaccttaattggattgatcttcataaggaa |
15532057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 2710960 - 2710887
Alignment:
| Q |
174 |
tcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttc |
247 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||||| || ||||||||||||| ||| || || |||||||||| |
|
|
| T |
2710960 |
tcacatagataatcttaattggctttctccactttcttctttgaaatatctcaacctcagcggtattgatcttc |
2710887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 15531819 - 15531873
Alignment:
| Q |
11 |
gtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgag |
65 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || | |||||||| |||||||| |
|
|
| T |
15531819 |
gtgagatgaatctttgtattctaaaacttgagtttcttagttacttcgatttgag |
15531873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 8458944 - 8459080
Alignment:
| Q |
14 |
agatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacat |
113 |
Q |
| |
|
|||| ||||||| ||||||||||||||| || ||||||||||||||||||||| || | ||||| || |||||| ||||| | |||||||||||| |
|
|
| T |
8458944 |
agatcaatctttccattctagaacttgagtttctgagttacttggatttgagcttacataaatttgatgtgataagaattccatcgattcaacacaacat |
8459043 |
T |
|
| Q |
114 |
cacacgtttatctaaacttgtctaccttgacttatcc |
150 |
Q |
| |
|
||||| | |||||| ||| | |||||||||||||| |
|
|
| T |
8459044 |
cacacatgcatctaaccttttgcaccttgacttatcc |
8459080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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