View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8005_low_15 (Length: 204)
Name: NF8005_low_15
Description: NF8005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8005_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 27981798 - 27981617
Alignment:
| Q |
1 |
acaagaaattgaggcaaaatgcaaagatcgcttgttagggaagcaacatagagaatctattccaaagaaaacacaatggagagcttcagagaagcttgat |
100 |
Q |
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| T |
27981798 |
acaagaaattgaggcaaaatgcaaagatcgcttgttagggaagcaacatagagaatctattccaaagaaaacacaatggagagcttcagagaagcttgat |
27981699 |
T |
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| Q |
101 |
ctggttcattctgatctatgtggccttattaaaccaagttccaactctggtagcagatacttcatgacatttactgatgatt |
182 |
Q |
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| T |
27981698 |
ctggttcattctgatctatgtggccttattaaaccaagttccaactctggtagcagatacttcatgacatttactgatgatt |
27981617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 28039100 - 28038919
Alignment:
| Q |
1 |
acaagaaattgaggcaaaatgcaaagatcgcttgttagggaagcaacatagagaatctattccaaagaaaacacaatggagagcttcagagaagcttgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28039100 |
acaagaaattgaggcaaaatgcaaagatcgcttgttagggaagcaacatagagaatctattccaaagaaaacacaatggagagcttcagagaagcttgat |
28039001 |
T |
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| Q |
101 |
ctggttcattctgatctatgtggccttattaaaccaagttccaactctggtagcagatacttcatgacatttactgatgatt |
182 |
Q |
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| T |
28039000 |
ctggttcattctgatctatgtggccttattaaaccaagttccaactctggtagcagatacttcatgacatttactgatgatt |
28038919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 40612317 - 40612160
Alignment:
| Q |
8 |
attgaggcaaaatgcaaagatcgcttgttagggaagcaacatagagaatctattccaaagaaaacacaatggagagcttcagagaagcttgatctggttc |
107 |
Q |
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| T |
40612317 |
attgaagcaaaatgcaaagattgcttgttaaggaggcaatatagggaaactattcctaagaaagcacaatggagagcttcagaaaagcttgaattgattc |
40612218 |
T |
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| Q |
108 |
attctgatctatgtggccttattaaaccaagttccaactctggtagcagatacttcat |
165 |
Q |
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| T |
40612217 |
actctgatctttgtggccctatcacacctggttccaactctggtagtagatacttcat |
40612160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 16864034 - 16864214
Alignment:
| Q |
2 |
caagaaattgaggcaaaatgcaaagatcgcttgttagggaagcaacatagagaatctattccaaagaaaacacaatggagagcttcagagaagcttgatc |
101 |
Q |
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| T |
16864034 |
caagagattgaagaaaaatgcaaagattgcttgttggggaagcaacatagggaagctattccaaagaaagcacaatggagagcttaagataagcttgaat |
16864133 |
T |
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| Q |
102 |
tggttcattctgatctatgtggccttattaaaccaagttccaactctggtagcagatacttcatgacatttactgatgatt |
182 |
Q |
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| T |
16864134 |
tgatccattctgatctatgtggccctatcaaaccaagtttcaattctggtagcagatacttcatgacatttactgatgatt |
16864214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 20529667 - 20529802
Alignment:
| Q |
2 |
caagaaattgaggcaaaatgcaaagatcgcttgttagggaagcaacatagagaatctattccaaagaaaacacaatggagagcttcagagaagc-ttgat |
100 |
Q |
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||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||||| ||||| |
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| T |
20529667 |
caagaaattgaagaaaaatgcaaagatttcttgttagggaagcaacatagagaatctagtccaaagaaagctcaatggagagctttagagaagctttgat |
20529766 |
T |
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| Q |
101 |
ctggttcattctgatctatgtggccttattaaaccaa |
137 |
Q |
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| T |
20529767 |
-tgattcactctgatatatgtggccctattaaaccaa |
20529802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 20542994 - 20543151
Alignment:
| Q |
8 |
attgaggcaaaatgcaaagatcgcttgttagggaagcaacatagagaatctattccaaagaaaacacaatggagagcttcagagaagcttgatctggttc |
107 |
Q |
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||||| ||||||||||||||| ||||||| ||||||||||| || ||| ||||||| |||||| ||||||||| ||||||| | |||||||| || ||| |
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| T |
20542994 |
attgaagcaaaatgcaaagattgcttgttggggaagcaacacagggaaactattcctaagaaagcacaatggaaagcttcataaaagcttgaattgattc |
20543093 |
T |
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| Q |
108 |
attctgatctatgtggccttattaaaccaagttccaactctggtagcagatacttcat |
165 |
Q |
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| |||||||| ||||||||||| | | | ||||||||||||||| ||||||||||| |
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| T |
20543094 |
actctgatctttgtggccttatcacatctggttccaactctggtattagatacttcat |
20543151 |
T |
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