View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8005_low_16 (Length: 203)
Name: NF8005_low_16
Description: NF8005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8005_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 36976209 - 36976042
Alignment:
| Q |
14 |
agaatatggaaagagttggttcaaggacacacattgcagtgacaatgaagggagcaaagaacatgaaagtgacgacaaccatgaagacaaagtattggga |
113 |
Q |
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| T |
36976209 |
agaagatggaaacagttggttcaaggacacacattgcagtgacattgaagggagcatagaacatgaaagtgacgacaaccatgaagacaaagtattggga |
36976110 |
T |
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| Q |
114 |
atggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtattttgggg |
181 |
Q |
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| T |
36976109 |
atggaaataaatccattctacataagcatggcaatgggattttcaactggattttgggtattttgggg |
36976042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 36964424 - 36964257
Alignment:
| Q |
14 |
agaatatggaaagagttggttcaaggacacacattgcagtgacaatgaagggagcaaagaacatgaaagtgacgacaaccatgaagacaaagtattggga |
113 |
Q |
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| T |
36964424 |
agaagatggaaacagctggttcaaggacaaacattgcagtgacattgaagggagcatagaacatgaaagtgatgacaaccatgaagacaaagtattggga |
36964325 |
T |
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| Q |
114 |
atggaaataaatccattatacataagcatggcaatgggattttcaactggattttgggtattttgggg |
181 |
Q |
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| T |
36964324 |
atggaaataaatccattatacataagcatggctatgggattttcaactggattttgggtattttgggg |
36964257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 36973361 - 36973307
Alignment:
| Q |
127 |
cattatacataagcatggcaatgggattttcaactggattttgggtattttgggg |
181 |
Q |
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| T |
36973361 |
cattctacataagcattgctatggggttttcaactggattttgggtattttgggg |
36973307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 5868949 - 5869060
Alignment:
| Q |
70 |
aagaacatgaaagtgacgacaaccatgaagacaaagtattgggaatggaaataaatccattatacataagcatggcaatgggattttcaactggattttg |
169 |
Q |
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| T |
5868949 |
aagaacatgaaaatgacggcaaccatggagacaaggtattggggatggaaataaatccattatacataagcatggctatggggttttcaactggattttg |
5869048 |
T |
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| Q |
170 |
ggtattttgggg |
181 |
Q |
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| T |
5869049 |
ggtattttgggg |
5869060 |
T |
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