View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8005_low_3 (Length: 452)
Name: NF8005_low_3
Description: NF8005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8005_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 2166438 - 2166856
Alignment:
| Q |
16 |
atactatttggactgcaacatcaaggtttgttatgtttctgcaattgtgattaaggcaagatcacttgaacttgttcacgattctccacaatatcaagaa |
115 |
Q |
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| T |
2166438 |
atactatttggactgcaacatcaaggtttgttatgtttctgcaattgtgattaaggcaagatcacttgaacttgttcacgattctccacaatatcaagaa |
2166537 |
T |
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| Q |
116 |
tcgcaacacaacagtttaaaatcttgatcacagtttctcttttcnnnnnnngctttcagataaagaaactccaactacgactgcaaccataatttaaaac |
215 |
Q |
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| T |
2166538 |
tcacaacacaacagtttaaaatcttgatcacagtttctcttttctttttttgctttcagataaagaaactccaactacgactgcaaccataatttaaaac |
2166637 |
T |
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| Q |
216 |
tttggc-aacagttataaacaattgaagacattaattcataccttttgattctttccttgagtttcaacaagaacttttcgttatcttcttcagcaattt |
314 |
Q |
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| T |
2166638 |
tttggcgaacagttataaacaattgaagacattaattcatacctttcgattctttccttgagtttcaacaagaacttttcgttatcttcttcagcaattt |
2166737 |
T |
|
| Q |
315 |
tcacaagtctctctagtaaaacctttctctcagttaatccaagttttttgatatcaatctctctcccttcaccttcttcattattgattatacttctcct |
414 |
Q |
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| T |
2166738 |
tcacaagtctctctagtaaaacctttctctcagttaatccaagttttttgatatcaatctctctcccttcaccttcttcattattgattatacttctcct |
2166837 |
T |
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| Q |
415 |
aatccttagatatgtagga |
433 |
Q |
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| T |
2166838 |
aatccttagatatgtagga |
2166856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 2154263 - 2154324
Alignment:
| Q |
263 |
attctttccttgagtttcaacaagaacttttcgttatcttcttcagcaattttcacaagtct |
324 |
Q |
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| T |
2154263 |
attctttccttgagtttcaacaagaacttttcattatcttcttctgctattttcacaagtct |
2154324 |
T |
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