View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8005_low_4 (Length: 421)
Name: NF8005_low_4
Description: NF8005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8005_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 401
Target Start/End: Original strand, 49655925 - 49656297
Alignment:
| Q |
14 |
ataatactcctaactatttcaattacaaatttaaaaccgtccccaagcgcatagttcatttatata------ggttgagatgttgaaagagtattacaaa |
107 |
Q |
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| T |
49655925 |
ataatactcctaactatttcaattacaaatttaaaaccgtccccgagcgcatagttcatttatatatatataggttgagatgttgaaagagtattacaaa |
49656024 |
T |
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| Q |
108 |
aaaggtccatatatgactctaacattaacaaattaatcactaacgtttgtctattaaaaaattataagtctaaaactattcaagacgttaccaattattc |
207 |
Q |
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| T |
49656025 |
aaaggtccata----------acattaacaaattaatcactaacgtttgtctattaaaaaattataagtctaaaactattcaaaacgttaccaattattc |
49656114 |
T |
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| Q |
208 |
aagtgctttataggttcttgttaatgaaatcatattgagacaagtaagtggctaatcaaacttttccaatagatatgttttgtagaagttagaatttcac |
307 |
Q |
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| T |
49656115 |
aagtgctt-----------gttaatgaaatcatattgagacaagtaagtggctaatcaaacttttccaatagatatgttttgtagaaattagaatttcac |
49656203 |
T |
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| Q |
308 |
gtcagacaccgtattccaaacacattctacatggtttctgattatatattaactccctcaccctctcttgcgaatgcgaacaccctcaggctaa |
401 |
Q |
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| T |
49656204 |
gtcagacaccgtattccaaacacattctacatggtttctgattatatattaactccctcaccctcccttgtgaatgtgaacaccctcaggctaa |
49656297 |
T |
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