View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8005_low_6 (Length: 413)
Name: NF8005_low_6
Description: NF8005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8005_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 399
Target Start/End: Complemental strand, 1333232 - 1332842
Alignment:
| Q |
9 |
ggtggtcaagaaggtgagcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaatatggaatatatgtttcaaaataaaag |
108 |
Q |
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| T |
1333232 |
ggtggtcaagaaggtgagcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaatatggaatatatgtttcaaaataaaag |
1333133 |
T |
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| Q |
109 |
gaaaactatgctcatgcccaagagcctctgcaacatgtaaacttgccatttatgatgctccaatgtactcccgtcgtcccttaatataagtggcttctcg |
208 |
Q |
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| T |
1333132 |
gaaaactatgctcatgcccaagagcctctgcaacatgtaaacttgccatttatgatgctccaatgtactcccgtcgtcccttaatataagtggcttctcg |
1333033 |
T |
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| Q |
209 |
gtacttgtcattttatttgcttccaacttgcaaccgctagaattagtggcttgaactaaaattttaatggtcacagaaaagtatctagtatttgcttacc |
308 |
Q |
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| T |
1333032 |
gtacttgtcattttatttgcttccaacttgcaaccgctagaattagtggcttgaactaaaattttaatggtcatagaaaagtatctagtatttgcttacc |
1332933 |
T |
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| Q |
309 |
tatttttatttgtttacgatgtcattaccacattgatccattttgcaactaatttgtgtgctattaacctataagtgttaggttctgattg |
399 |
Q |
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| T |
1332932 |
tatttttatttgtttacgatgtcattaccacattgatccattttgcaactaatttgtgtgctattagcctattagtgttaggttctgattg |
1332842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 12635949 - 12636006
Alignment:
| Q |
25 |
agcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaat |
82 |
Q |
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| T |
12635949 |
agcttatgctagcaaggtatattttgaagaatgcaagagttttacaaaccatgacaat |
12636006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 41662590 - 41662526
Alignment:
| Q |
24 |
gagcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaatatggaa |
88 |
Q |
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| T |
41662590 |
gagcttatgctagcaaggtatgttttgaagaatgcaagagttttacaaaccatgaaaatctggaa |
41662526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 49445394 - 49445333
Alignment:
| Q |
21 |
ggtgagcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaat |
82 |
Q |
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| T |
49445394 |
ggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaat |
49445333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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