View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8005_low_7 (Length: 380)
Name: NF8005_low_7
Description: NF8005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8005_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 55337405 - 55337056
Alignment:
| Q |
18 |
gttattttattgtgtgtatacaaatattcctacatttggtccataggtatctaagaacctatttgtttaatacctcccataactctt-gtcttaaaaaat |
116 |
Q |
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| T |
55337405 |
gttattttattgtgtgtatacaaatattcctacatttggtccataggtatctaagaacctatttgtttaatacctcccataactctttgtactaaaaaat |
55337306 |
T |
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| Q |
117 |
tgaataaaactataacattacaagttgcactcatcctccctgtcacaatagtatagtatatatataaacctttcctcactaacactaaacacaaagcaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
55337305 |
tgaataaaactataacattacaagttgcactcatcctccctgtcacaatagtata-----tatataaacctttcctcactaacactaaacacaaatcaaa |
55337211 |
T |
|
| Q |
217 |
acataattaacatacgtacaatcatttcattttcatggcttccatgcacacctcaacttcttctttttctttcttgtcttcaaaaagaggaaatgtgaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55337210 |
acataattaacatacgtacaatcatttcattttcatggcttccatgcacacctcaacttcttctttttctttcttgtcttcaaaaagaggtaatgtgaat |
55337111 |
T |
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| Q |
317 |
gcctcaatccatttcccaagacccaattctttacttcctaagaataatataccca |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55337110 |
gcctcaatccatttcccaagacccaattctttacttcctaagaataggataccca |
55337056 |
T |
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