View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8006_high_1 (Length: 481)
Name: NF8006_high_1
Description: NF8006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8006_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 16 - 481
Target Start/End: Complemental strand, 38118262 - 38117793
Alignment:
| Q |
16 |
acatcatgcggctaaaataagatatgataaatgagaagtcacacaatatatacatagaaaatctttaacatatgtataaaaaacacttaggnnnnnnnnn |
115 |
Q |
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| T |
38118262 |
acatcatgcggctaaaataagagatgataaatgagaagtcacacaatatatacatagaaaatctttaacatatgtataaaaaacacttaggaaaaaaaaa |
38118163 |
T |
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| Q |
116 |
----cacttagaaattcactattttattagaaaaagaatgtgggacattaaagtttgtcaaaacgtacaagtatttaaaattagatgcaatgtaaaataa |
211 |
Q |
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| T |
38118162 |
aaaacacttagaaattcactattttattagaaaaagaatgtgggacattaaagtttgtcaaaacgtacaagtatttaaaattagatgcaatgtaaaataa |
38118063 |
T |
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| Q |
212 |
atagaatttgcacctttgcactgaacagaagctccattaatattacatgcttgtgaaagagatattgcaagaacttggttaataggtagttgaaaaattt |
311 |
Q |
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| T |
38118062 |
atagaatttgcacctttgcactgaacagaagctccattaatattacatgcttgtgaaagagatattgcaagaacttggttaataggtagttgaaaaattt |
38117963 |
T |
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| Q |
312 |
gagcattggaagacatcataaggcaagcacaatccatatttgtgctcatcaaagaccttaatgaatcgcaacaagtagttgatggtactaaaccattatt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38117962 |
gagcattggaagacatcataaggcaagcacaatccatatttgtgctcatcaaagaccttaatgaatcacaacaagtagttgatggtactaaaccattatt |
38117863 |
T |
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| Q |
412 |
agtgcttcctgttatgatgttagcacatggagtgaatgtgctgctaatcatagaggatgtgcatgatgaa |
481 |
Q |
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| T |
38117862 |
agtgcttcctgttatgatgttagcacatggagtgaatgtgctgctaatcatagaggatgtgcatgatgaa |
38117793 |
T |
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