View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8006_low_3 (Length: 391)

Name: NF8006_low_3
Description: NF8006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8006_low_3
NF8006_low_3
[»] chr5 (5 HSPs)
chr5 (1-375)||(26342661-26343035)
chr5 (4-376)||(26349408-26349782)
chr5 (234-300)||(26309449-26309515)
chr5 (231-263)||(24805683-24805715)
chr5 (252-300)||(26315438-26315486)
[»] chr1 (5 HSPs)
chr1 (220-279)||(33080296-33080355)
chr1 (226-307)||(1939365-1939446)
chr1 (226-287)||(1950114-1950175)
chr1 (220-281)||(17374374-17374435)
chr1 (205-307)||(1969834-1969934)
[»] chr6 (1 HSPs)
chr6 (252-317)||(3067197-3067262)
[»] scaffold1149 (1 HSPs)
scaffold1149 (256-316)||(1190-1250)
[»] chr3 (1 HSPs)
chr3 (205-281)||(17224913-17224989)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 26342661 - 26343035
Alignment:
Q  1 aggatgaaattgttacagtaggttaagggcaacaagagtaactttgcctagatatttctattccaatattataaaaatcaacgacaacactctctgattg 100  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  26342661 aggatgaaattgttaccgtaggttaagagcaacaagagtaactttgcctagatatttctattcctatattataaaaataaacgacaacactctctgattg 26342760  T
Q  101 tgctattttcgaaaggctgaaagttaattttgcctctcatgaaaggttgaaagttaattaaaaatgtattatttttaatgattggcaaattttttacctt 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26342761 tgctattttcgaaaggttgaaagttaattttgcctctcatgaaaggttgaaagttaattaaaaatgaattatttttaatgattggcaaattttttacctt 26342860  T
Q  201 acccctttagtaagcatgataaagtgacaaacacaacacattgatctataaaagagacatttaataatgattttaattttaaggaggcttatttacaact 300  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||||||    
T  26342861 acccctttagtaagcatgataaagtgacaaacacgatacattgatctacaaaagagacatttaataatgattctaattttagggagacttatttacaact 26342960  T
Q  301 ccttaagcactaaaaataataattgtttttaggtcatcatgctctttatacactataaagtggtctaatcatatt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26342961 ccttaagcactaaaaataataattgtttttaggtcatcatgctctttatagactataaagtggtctaatcatatt 26343035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 376
Target Start/End: Original strand, 26349408 - 26349782
Alignment:
Q  4 atgaaattgttacagtaggttaagggcaacaagagtaactttgcctagatatttctattccaatattataaaaatcaacgacaacactctctgattgtgc 103  Q
    ||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  26349408 atgaaatcgttaccgtaggttaagggcaacaatagtaattttgcctagatatttctattcaaatattataaaaatcaacgacaacactctctgattatgc 26349507  T
Q  104 tattttcgaaaggctgaaagttaattttgcctct------catgaaaggttgaaagttaattaaaaatgtattatttttaatgattggcaaattttttac 197  Q
    ||| |||||     ||||  || |  || | |||      |||||| |||| ||| ||||||||||||  |||||||||||||||| |||| ||||||||    
T  26349508 tatgttcgagctattgaatttttaaatttcttctttatatcatgaatggtttaaaattaattaaaaataaattatttttaatgattagcaatttttttac 26349607  T
Q  198 cttacccctttagtaagcatgataaagtgacaaacacaacacattgatctataaaagagacatttaataatgattttaattttaaggaggcttatttaca 297  Q
     ||||||||| ||||    |||||||| |||||||| |||||||||||||| ||||||||| ||||||||||||| |||||||| || ||||||||||||    
T  26349608 gttaccccttaagta----tgataaagcgacaaacataacacattgatctacaaaagagacgtttaataatgattctaattttaggggggcttatttaca 26349703  T
Q  298 actccttaagcactaaaaataataattgtttttaggtcatcatgctctttatacactataaagtggtctaatcatattt 376  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||    
T  26349704 actccttaagcactaaaaataataattgttttcaggacatcatgctctttatatactataaagtggtctaatcatattt 26349782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 300
Target Start/End: Original strand, 26309449 - 26309515
Alignment:
Q  234 caacacattgatctataaaagagacatttaataatgattttaattttaaggaggcttatttacaact 300  Q
    |||||||||||| ||   ||||||||| ||||||| |||  ||||||||||||||||||||||||||    
T  26309449 caacacattgatttacttaagagacatataataatcattcaaattttaaggaggcttatttacaact 26309515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 24805683 - 24805715
Alignment:
Q  231 acacaacacattgatctataaaagagacattta 263  Q
    ||||||||||||||||||| |||||||||||||    
T  24805683 acacaacacattgatctattaaagagacattta 24805715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 26315438 - 26315486
Alignment:
Q  252 aagagacatttaataatgattttaattttaaggaggcttatttacaact 300  Q
    ||||||||||||||||| |||  ||||||| ||||||||||||| ||||    
T  26315438 aagagacatttaataatcattcaaattttagggaggcttatttaaaact 26315486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 33080355 - 33080296
Alignment:
Q  220 taaagtgacaaacacaacacattgatctataaaagagacatttaataatgattttaattt 279  Q
    ||||| |||||||||| |||||||||||| |||||||  |||||||||||||||||||||    
T  33080355 taaagagacaaacacagcacattgatctacaaaagaggtatttaataatgattttaattt 33080296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 1939446 - 1939365
Alignment:
Q  226 gacaaacacaacacattgatctataaaagagacatttaataatgattttaattttaaggaggcttatttacaactccttaag 307  Q
    ||||| || ||||||||||||||   |||||||| ||| |||||||||||||| ||||||||  | ||||||| ||||||||    
T  1939446 gacaagcataacacattgatctacttaagagacacttactaatgattttaattataaggaggactttttacaaatccttaag 1939365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 1950175 - 1950114
Alignment:
Q  226 gacaaacacaacacattgatctataaaagagacatttaataatgattttaattttaaggagg 287  Q
    ||||| |||||||||||||||||   |||||||| |||||||||||| |||||||| |||||    
T  1950175 gacaagcacaacacattgatctacttaagagacacttaataatgattctaattttagggagg 1950114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 17374374 - 17374435
Alignment:
Q  220 taaagtgacaaacacaacacattgatctataaaagagacatttaataatgattttaatttta 281  Q
    ||||| |||||  ||||||||||||| ||   ||||||||||||||||||||||||||||||    
T  17374374 taaagggacaataacaacacattgatttacttaagagacatttaataatgattttaatttta 17374435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 1969934 - 1969834
Alignment:
Q  205 ctttagtaagcatgataaagtgacaaacacaacacattgatctataaaagagacatttaataatgattttaattttaaggaggcttatttacaactcctt 304  Q
    ||||||||||  || ||||  ||||| |||||||||||||| ||   |||||| | |||||||||||| |||||||  |||||||| |||||||||||||    
T  1969934 ctttagtaagtgtgctaaaaggacaagcacaacacattgatgtacttaagagatacttaataatgattctaatttt-gggaggctt-tttacaactcctt 1969837  T
Q  305 aag 307  Q
    |||    
T  1969836 aag 1969834  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 3067197 - 3067262
Alignment:
Q  252 aagagacatttaataatgattttaattttaaggaggcttatttacaactccttaagcactaaaaat 317  Q
    |||||||||||||||||||||| ||||||| | ||| || ||||||||| | |||| |||| ||||    
T  3067197 aagagacatttaataatgatttcaattttaggaaggattttttacaactacataagtactataaat 3067262  T

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Target: scaffold1149 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 1250 - 1190
Alignment:
Q  256 gacatttaataatgattttaattttaaggaggcttatttacaactccttaagcactaaaaa 316  Q
    ||||||||  |||||||||||||||| | ||| || |||||||| |||||||| |||||||    
T  1250 gacatttaccaatgattttaattttatgaaggattttttacaacaccttaagcgctaaaaa 1190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 17224989 - 17224913
Alignment:
Q  205 ctttagtaagcatgataaagtgacaaacacaacacattgatctataaaagagacatttaataatgattttaatttta 281  Q
    ||||||| || ||| ||||| |||||| ||||||||||||||||   ||||||| |||| ||||||||  |||||||    
T  17224989 ctttagttagtatgttaaagggacaaatacaacacattgatctacttaagagacttttactaatgattccaatttta 17224913  T

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