View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8007_high_1 (Length: 736)
Name: NF8007_high_1
Description: NF8007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8007_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 547
Target Start/End: Complemental strand, 30778754 - 30778234
Alignment:
| Q |
17 |
acatcattttggtgtgatctttgactgcatggtgcaagtttgtgggttaggttttggcgtctttttgatttacgtttgataaagatgttaccttagtgga |
116 |
Q |
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| T |
30778754 |
acatcattttggtgtgatctttgactgcatggtgaaggtttgtgggttaggttttggcgtccttttgatttacgtttgataaaggtgttaccttagtgga |
30778655 |
T |
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| Q |
117 |
gattaggaggctagcatgggggattgataggctagggtaaccgtggaagaagacgtctccatgtgatttagttgtcggttgtttaagag-tttggaagga |
215 |
Q |
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| T |
30778654 |
gattaggaggctagcatgggggattgataggctaggatagcggtggaagaagacgtctccatgtgatttagttgtcggttgtttaagatatttggaagga |
30778555 |
T |
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| Q |
216 |
caagaatagtcgtatttttcgacatatagatcaatcgatacagcaaccggtgaacatcgtgaagttttcttcttttagatggttacaatcgaaaattaac |
315 |
Q |
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| T |
30778554 |
taagaatagtcgtatttttcgacatataga-caatcgatacaacaaccggtgaatatcgtgaaattttcttcttttagatggttacaaccgaaaattaac |
30778456 |
T |
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| Q |
316 |
aacttagcctttgattttcatcatcggtggacaagcaaaaattgcaacttagcttttgattttcatcattggtggacaaatctcattgagtattttacca |
415 |
Q |
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| T |
30778455 |
aacttagcttttgattttcatcatcggtggacaagcaaaaattgcaacgtagcttttgattttcatcatcggtggacaaatctcattgagtgttttacca |
30778356 |
T |
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| Q |
416 |
tgattcctagttagtgatttccattttttattaattagtcgtggtataggttatttgcttgttgtctgtaactcttactgaatcttaacctaacacttct |
515 |
Q |
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| T |
30778355 |
tgattcctagttagtgatttccattttttattaattagtcgtggtataggttatttgtttgctgtctgtaactcttagt----------ctaacacttct |
30778266 |
T |
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| Q |
516 |
tgtgcggatgtagaactccgtttgttaatata |
547 |
Q |
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| T |
30778265 |
tgtgcggacgtagaactccgtttgttaatata |
30778234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 605 - 720
Target Start/End: Complemental strand, 30778176 - 30778061
Alignment:
| Q |
605 |
caaactaacaaattagagtttgacatcaatttttgtaaagatgtttaatattttagaaagaagctgttagtcctatgtttcgtaagaaatcaacttttct |
704 |
Q |
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| T |
30778176 |
caaactaacaaattagagtttgacatcaatttttgtaaagatgtttaatattttagaaagaagctgttagtcctatgtttcgtaagaaatcaacttttct |
30778077 |
T |
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| Q |
705 |
tatcgtacgaagtaag |
720 |
Q |
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| T |
30778076 |
tatcgtacgaagtaag |
30778061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 431
Target Start/End: Original strand, 42603256 - 42603318
Alignment:
| Q |
369 |
ttttgattttcatcattggtggacaaatctcattgagtattttaccatgattcctagttagtg |
431 |
Q |
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| T |
42603256 |
ttttgattttcattactggttgacaaatctcattgagtgttttaccatgcttcttagttagtg |
42603318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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