View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8008_high_17 (Length: 394)
Name: NF8008_high_17
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 386
Target Start/End: Complemental strand, 44498369 - 44497998
Alignment:
| Q |
15 |
tctagcacttgtattcgaaccaggacctctattcttatattcaccatagaacaatgtatccaaagcaaacgttccattccactctaaccatcctgctgga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498369 |
tctagcacttgtattcgaaccaggacctctattcttatattcaccatagaacaatgtatccaaagcaaacgttccattccactctaaccatcctgctgga |
44498270 |
T |
|
| Q |
115 |
tcaatcaaattatctataaaagaattcagataaacagttcttgaatattttttccaaggacgaccaaggtaactcttgaacgttgattggactggaatca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498269 |
tcaatcaaattatctataaaagaattcagataaacagttcttgaatattttttccaaggacgaccaaggtaactcttgaacgttgattggactggaatca |
44498170 |
T |
|
| Q |
215 |
aatccgcagcagctgcaattttacaattcaatattgaaattccggtgttttggttaggatcttctctgccttgtgcagtgaacaaattcttttgctttgg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498169 |
aatccgcagcagctgcaattttacaattcaatattgaaattccggtattttggttaggatcttctctgccttgtgcagtgaacaaattcttttgctttgg |
44498070 |
T |
|
| Q |
315 |
atcgggtttacgtgcatataggttgcagttttggaataccacagctgcgttgccaaagatgaagtctacagt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498069 |
atcgggtttacgtgcatataggttgcagttttggaataccacagctgcgttgccaaagatgaagtctacagt |
44497998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 10820977 - 10820930
Alignment:
| Q |
336 |
gttgcagttttggaataccacagctgcgttgccaaagatgaagtctac |
383 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
10820977 |
gttgcaattttggaataccactgcagcgttgccaaagatgaagtctac |
10820930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 383
Target Start/End: Original strand, 1629728 - 1629768
Alignment:
| Q |
343 |
ttttggaataccacagctgcgttgccaaagatgaagtctac |
383 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
1629728 |
ttttggaataccactgcggcgttgccaaagatgaagtctac |
1629768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 1623549 - 1623592
Alignment:
| Q |
340 |
cagttttggaataccacagctgcgttgccaaagatgaagtctac |
383 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
1623549 |
cagttttggaatactactgcagcgttgccaaagatgaagtctac |
1623592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 12802807 - 12802849
Alignment:
| Q |
338 |
tgcagttttggaataccacagctgcgttgccaaagatgaagtc |
380 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
12802807 |
tgcagttttggaaaactacggctgcgttgccaaagatgaagtc |
12802849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University