View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_high_18 (Length: 362)
Name: NF8008_high_18
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 19129751 - 19130105
Alignment:
| Q |
1 |
ttttaccacatatcaatgaaccacactcnnnnnnngcatctacaacaaacaacacatttctcttttgctgaaaatcaaacaaggaacattgaaatattat |
100 |
Q |
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| T |
19129751 |
ttttgccacatatcaatgaaccacactctttttttgcatctacaacaaacaacacatttctcttttgctgaaaatcaaacaaggaacattgaaatattat |
19129850 |
T |
|
| Q |
101 |
gaacaattcagatttagaaaccttgtttcttcaaagtgaaacaaacccatatgaagaagatgaccaaaaagtgatttttctttgtaaatctattgaattg |
200 |
Q |
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| T |
19129851 |
gaacaattcagatttagaaaccttgtttcttcaaagtgaaacaaacccatatgaagaagatgaccaaaaagtgatttttctttgtgaatctattgaattg |
19129950 |
T |
|
| Q |
201 |
aaaaactgtgatgaaaaagaagttctagagctaccccaatccaatgatgcctttagcatcattagataacccattaaataaaagggtatttaaacaagtg |
300 |
Q |
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| T |
19129951 |
aaaaactgtgatgaaaaagaagttctagatcta-cccaatccaacgatgcctttagcatcattagataacccattaaacaaaagggtatttaaacaagtg |
19130049 |
T |
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| Q |
301 |
aataaaaattcatgggctggttcaaaaattgaatctttaatttatttctctgctac |
356 |
Q |
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| T |
19130050 |
aataaaaattcatgggctggttcaaaaattgaatctttaatttatttcactgctac |
19130105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 107 - 355
Target Start/End: Complemental strand, 7756842 - 7756592
Alignment:
| Q |
107 |
ttcagatttagaaaccttgtttcttca---aagtgaaacaaacccatatgaagaagatgaccaaaaagtgatttttctttgtaaatctattgaattgaaa |
203 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||| | ||||||||| | ||||||||||||||||| | | |||| |||||||||||| |
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| T |
7756842 |
ttcagattcagaaaccttgtttcttcttccaagtgaaacaaacccagaagaagaagataaacaaaaagtgatttttctgtctgaatcaattgaattgaaa |
7756743 |
T |
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| Q |
204 |
aactgtgatgaaaaagaagttctagagctaccccaatccaatgatgcctttagcatcattagataacccattaaataaaagggtatttaaacaagtgaat |
303 |
Q |
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| T |
7756742 |
aactgtgatgaaaaagaggttctagatctacca-aacccaacaatgcctttagcatcattagataacccattcaacaaaagggtatttgaacaagtgaac |
7756644 |
T |
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| Q |
304 |
aaaaattcatgggctggttcaaaaattgaatctttaatttatttctctgcta |
355 |
Q |
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||| ||||||||||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
7756643 |
aaatattcatgggctggttcaaaaattgaatctttcattgatttcactgcta |
7756592 |
T |
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