View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_high_20 (Length: 356)
Name: NF8008_high_20
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 188 - 340
Target Start/End: Original strand, 13875592 - 13875744
Alignment:
| Q |
188 |
gttcacaaccaccgccatggccacaatcgcctccaccatcttgagcggtaaataatccagttttttactcacacaattttcccccaattcattatacact |
287 |
Q |
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| T |
13875592 |
gttcacaaccaccgccatagccacaatcgcctccaccatcttgagcggtaaataatccagttttttactcacacaattttcccccaattcattatacacc |
13875691 |
T |
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| Q |
288 |
gaagaagaaaaacaaaatatttcccaaattgattaaactcaaacaaaatatat |
340 |
Q |
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| T |
13875692 |
gaagaagaaaaacaaaatatttcccaaattgattaaacacaaacaaaatatat |
13875744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 13875380 - 13875474
Alignment:
| Q |
13 |
aatatcaacaacaaatccaaaatttagaagggttaatctatcatgctcctcttccccttcttcatcttcattctatcatgttcattttcacattc |
107 |
Q |
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| T |
13875380 |
aatagcaacaacaaatccaaaatttagaagggttaatctatcatgctcgtcttccccttcttcatcttcattctatcatgctcattttcacattc |
13875474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 182 - 340
Target Start/End: Complemental strand, 46496699 - 46496541
Alignment:
| Q |
182 |
cgacaggttcacaaccaccgccatggccacaatcgcctccaccatcttgagcggtaaataatccagttttttactcacacaattttcccccaattcatta |
281 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46496699 |
cgacaggctcacaaccaccgccatagccacaatcgcctccaccatcttgagcggtaaataatccagttttttactcacacaattttcccctaattcatta |
46496600 |
T |
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| Q |
282 |
tacactgaagaagaaaaacaaaatatttcccaaattgattaaactcaaacaaaatatat |
340 |
Q |
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| T |
46496599 |
tacacagaagaagaaaaacaaaatatttcccaaattgattcaacacaaacaaaatatat |
46496541 |
T |
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