View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8008_high_22 (Length: 353)
Name: NF8008_high_22
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 28 - 337
Target Start/End: Complemental strand, 43880451 - 43880142
Alignment:
| Q |
28 |
gtacaataaggcctttctttaatagcattaagaaaaatataaaatcaatatgtcaagagggtttataccattgtgtaagtttttccggacccggtttggc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43880451 |
gtacaataaggcctttctttaatagcattaagaaaaatataaaatcaatatgtcaagagggtttataccattgtgtaagtttttccggacccggtttggc |
43880352 |
T |
|
| Q |
128 |
cataagcgaatatacatacattatatccatcgagtaccgatcttacaaaaggttgaatgtcagcgtatacatctcctgtgcatcattcaaagtagaatca |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43880351 |
cataagcgaatatacatacattatatccatcgagtaccgatcttacaaaaggttgaatgtcagcgtatacatctcctgtgcatcattcaaagtagaatca |
43880252 |
T |
|
| Q |
228 |
cgggacaacgtcagaatataaacattacaactaaaactaagtaaaaactgtaatatcgatacacatgaataatgatgcaaaattttcatctctggatata |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43880251 |
cgggacaacgtcagaatataaacattacaactaaaactaagtaaaaactgtaatatcgatacacatgaataatgatgcaaaattttcatctctggatata |
43880152 |
T |
|
| Q |
328 |
aggaatactt |
337 |
Q |
| |
|
|||||||||| |
|
|
| T |
43880151 |
aggaatactt |
43880142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 31647605 - 31647691
Alignment:
| Q |
92 |
ataccattgtgtaagtttttccggacccggtttggccataagcgaatatacatacattatatccatcgagtaccgatcttacaaaag |
178 |
Q |
| |
|
|||||||||||||||||||||| || || || || |||||||| |||||||| |||||||| ||||| ||||| ||||||| ||||| |
|
|
| T |
31647605 |
ataccattgtgtaagtttttcctgaacctgtctgaccataagcaaatatacaaacattataaccatcaagtactgatcttataaaag |
31647691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 44588247 - 44588312
Alignment:
| Q |
93 |
taccattgtgtaagtttttccggacccggtttggccataagcgaatatacatacattatatccatc |
158 |
Q |
| |
|
|||||| |||||||||||||| || || ||||||||||| || ||||| || |||||||| ||||| |
|
|
| T |
44588247 |
taccatcgtgtaagtttttccagatcctgtttggccatatgcaaatatgcaaacattatagccatc |
44588312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 39341533 - 39341465
Alignment:
| Q |
93 |
taccattgtgtaagtttttccggacccggtttggccataagcgaatatacatacattatatccatcgag |
161 |
Q |
| |
|
|||||| ||| |||||||||| || || |||||||||||||| ||||| || |||||| | |||||||| |
|
|
| T |
39341533 |
taccatggtgaaagtttttcctgatcctgtttggccataagcaaatatgcaaacattaaaaccatcgag |
39341465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University