View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_high_28 (Length: 328)
Name: NF8008_high_28
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 200894 - 201195
Alignment:
| Q |
20 |
aagagaattatattctaactgcttttgaacttcttcatgaacttcttgatgatggacgaaccaatcaagccattcgtcttcaacaatacttttctgatcc |
119 |
Q |
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| T |
200894 |
aagagaattatattctaactgcttttgaacttcttcatgaacttcttgatgatggacgaaccaatcaagccattcgtcttcaacaatacttttctgatcc |
200993 |
T |
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| Q |
120 |
ttctagatttccttctaatcaaatctctcgtttcaattccctctcatgtatatatccttcctctctcttccttctttaatttactttattgaatcgttat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
200994 |
ttctagatttccttctaatcaaatctctcgtttcaattccctctcatgtatatatccttcctctctcttccttctttaatttactttattgaatcgttat |
201093 |
T |
|
| Q |
220 |
tttgattcttcaaataaattgtaatgtataatctctgtagcacctacacttatgatatagaagatgtgttcggtgatcaatatgtgttagtaaccaacac |
319 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
201094 |
tttgatccttcaaataaattgtaatgtataatctctgtagcacctacacttatgatatagaagatgtgttcggtgatcaatatgtgttagtaaccaacac |
201193 |
T |
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| Q |
320 |
ga |
321 |
Q |
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|| |
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| T |
201194 |
ga |
201195 |
T |
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