View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8008_high_31 (Length: 319)

Name: NF8008_high_31
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8008_high_31
NF8008_high_31
[»] chr3 (6 HSPs)
chr3 (13-318)||(48838468-48838773)
chr3 (138-233)||(38044108-38044206)
chr3 (143-255)||(50904604-50904722)
chr3 (13-65)||(50904860-50904912)
chr3 (11-63)||(50911939-50911991)
chr3 (13-65)||(55084806-55084858)
[»] chr5 (2 HSPs)
chr5 (207-255)||(33492942-33492990)
chr5 (13-63)||(1754311-1754361)
[»] chr4 (7 HSPs)
chr4 (13-67)||(27424580-27424634)
chr4 (11-65)||(27502875-27502929)
chr4 (13-67)||(27505768-27505822)
chr4 (13-67)||(27523469-27523523)
chr4 (13-67)||(27526178-27526232)
chr4 (13-66)||(27476707-27476760)
chr4 (19-67)||(27414370-27414418)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 48838773 - 48838468
Alignment:
Q  13 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaatgggtggcctcacaattccttgcacataaaatcgttttttcttatt 112  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||     
T  48838773 atgaagcggtttgtgattcccgtgtcctacctgaaccaatcttcatttcaagaatgggtggcctcacaattccttgcacataaaattgtttttgcttata 48838674  T
Q  113 acttactgggctgtaaatgcagcttactggcatagattagtagtgacattttgaataataagcatttttacactagtaaatatttttcctattcccttta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48838673 acttactgggctgtaaatgcagcttactggcatagattagtagtgacattttgaataataagcatttttacactagtaaatatttttcttattcccttta 48838574  T
Q  213 ttgggaaaatgggcgaaaattgtctatatgaatgacatacatagttctcactaacattagttcgcgcttttttcaaatgatgacacaatgtttcaacaac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48838573 ttgggaaaatgggcgaaaattgtctatatgaatgacatacatagtactcactaacattagttcgtgcttttttcaaatgatgacacaatgtttcaacaac 48838474  T
Q  313 ttcact 318  Q
    ||||||    
T  48838473 ttcact 48838468  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 38044108 - 38044206
Alignment:
Q  138 actggcatagattagtagtgacattttgaataataagcattttt---acactagtaaatatttttcctattccctttattgggaaaatgggcgaaaatt 233  Q
    |||| ||||||||||| ||||||||||||| |||| ||||||||   ||||| ||||||||||||||| |||||||||||||||||||||| |||||||    
T  38044108 actgacatagattagtcgtgacattttgaacaataggcattttttttacacttgtaaatatttttccttttccctttattgggaaaatgggtgaaaatt 38044206  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 255
Target Start/End: Complemental strand, 50904722 - 50904604
Alignment:
Q  143 catagattagtagtgacattttgaataataagc-----atttttacactagtaaatatttttcctattccctttattgggaaaatgggcg-aaaattgtc 236  Q
    ||||||||||||||||||||||||| |||| ||      |||||||||| ||||||||||||||| ||||| | ||||||||||| || | |||||||||    
T  50904722 catagattagtagtgacattttgaacaataggcgttttttttttacacttgtaaatatttttccttttcccgtgattgggaaaataggtgaaaaattgtc 50904623  T
Q  237 tatatgaatgacatacata 255  Q
    || ||||||||||||||||    
T  50904622 taaatgaatgacatacata 50904604  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 50904912 - 50904860
Alignment:
Q  13 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaaga 65  Q
    ||||||||||||||||| |   ||||||||||||||||| |||||||||||||    
T  50904912 atgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaaga 50904860  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 50911991 - 50911939
Alignment:
Q  11 agatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaa 63  Q
    ||||||| ||||||||||| |||  ||| |||||||||||| |||||||||||    
T  50911991 agatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaa 50911939  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 55084806 - 55084858
Alignment:
Q  13 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaaga 65  Q
    ||||||||||||||||| ||  |||| |||||||||||| | |||||||||||    
T  55084806 atgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaaga 55084858  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 33492942 - 33492990
Alignment:
Q  207 cctttattgggaaaatgggcgaaaattgtctatatgaatgacatacata 255  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  33492942 cctttattgggaatatgggtgaaaattgactatatgaatgacatacata 33492990  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 1754361 - 1754311
Alignment:
Q  13 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaa 63  Q
    ||||||||||||||||| ||||| || |||||||||||||| |||||||||    
T  1754361 atgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaa 1754311  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 27424634 - 27424580
Alignment:
Q  13 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 67  Q
    |||| ||||||||||||||| || || |||||||||||| |||||||||||||||    
T  27424634 atgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaat 27424580  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 27502929 - 27502875
Alignment:
Q  11 agatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaaga 65  Q
    ||||||||||||||||||||||  |||| || ||||| ||| |||||||||||||    
T  27502929 agatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaaga 27502875  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 27505822 - 27505768
Alignment:
Q  13 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 67  Q
    |||||||||||||||||||| || || |||||||||||| | ||||| |||||||    
T  27505822 atgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaat 27505768  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 27523523 - 27523469
Alignment:
Q  13 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 67  Q
    |||||||||||||||||||| || || || ||||||||| ||||||| |||||||    
T  27523523 atgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaat 27523469  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 27526232 - 27526178
Alignment:
Q  13 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 67  Q
    |||||||||||||||||||| || || |||||||||||| | ||||| |||||||    
T  27526232 atgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaat 27526178  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 27476707 - 27476760
Alignment:
Q  13 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaa 66  Q
    |||||||||||||||||||| || || |||||||||||| | ||||| ||||||    
T  27476707 atgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaa 27476760  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 27414418 - 27414370
Alignment:
Q  19 cggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 67  Q
    |||||||||||||| || || |||||||||||| | |||||||||||||    
T  27414418 cggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaat 27414370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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