View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_high_32 (Length: 307)
Name: NF8008_high_32
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 74 - 292
Target Start/End: Original strand, 4888296 - 4888511
Alignment:
| Q |
74 |
tcaatctcccttcacctcccctaaggttgattttgtttttagaaaagaacaaatattgtgtagccatgttgcnnnnnnnnnnnnnnnnnnnncaatatat |
173 |
Q |
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| T |
4888296 |
tcaatctcccttcacctcccctaaggttgattttgtttttagaaaagaacaaatattgtgtagccatgttgcaaaaaaaaaattaaaaa---caatatat |
4888392 |
T |
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| Q |
174 |
ttcttcaacctaaaatttgtttttgaaggactcattgtctcatttaaaaatgtgaaaaaggctttataaatagggttatattcaatgcaataataatatt |
273 |
Q |
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| T |
4888393 |
ttcttcaacctaaaatttgtttttgaaggactcattgtctcatttaaaaatgtgaaaaaggctttataaatagggttatattcaatgcaataataatatt |
4888492 |
T |
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| Q |
274 |
gttgctacatgaatatttt |
292 |
Q |
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| T |
4888493 |
gttgctacatgaatatttt |
4888511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 4888098 - 4888151
Alignment:
| Q |
14 |
agaaatcaaatacatttgtgttttattaaacgaacacaaatgtagggcatgatt |
67 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
4888098 |
agaaatcaaatacatttgcgttttattaaatgaacacaaatgtagggcatgatt |
4888151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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