View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_high_38 (Length: 275)
Name: NF8008_high_38
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 32511905 - 32512163
Alignment:
| Q |
1 |
tgaaagcaacaaaataatagcatacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatcta |
100 |
Q |
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| T |
32511905 |
tgaaagcaacaaaataatagcatacctagccctagtgattgcaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatcta |
32512004 |
T |
|
| Q |
101 |
acagtagatattattatgaggtcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggatccgaaaccatgtactgcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32512005 |
acagtagatattattatgaggtcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggagccgaaaccatgtactgcttca |
32512104 |
T |
|
| Q |
201 |
ctctctcttggatttcatgaacttgcgccttgtatggagatatgatccctatgctaact |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32512105 |
ctctctcttggatttcatgaacttgcgccttgtatggagatatgatccctatgctaact |
32512163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 32545454 - 32545220
Alignment:
| Q |
21 |
catacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatctaacagtagatattattatgag |
120 |
Q |
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||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| |
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| T |
32545454 |
catacctagccctagtgattgcaacatttgctctttgtctattggaaagaaaaccaacttttccactcagatttgatctaacagtagatatgattatgat |
32545355 |
T |
|
| Q |
121 |
gtcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggatccgaaaccatgtactgcttcactctctcttggatttcatga |
220 |
Q |
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| T |
32545354 |
gtcttcttcgccaccttgaaaaccatcaacagaacgaacactaacagaaaagttaggatccgaaaccatgtactgcttcactttctcttggatttcatga |
32545255 |
T |
|
| Q |
221 |
acttgcgccttgtatggagatatgatccctatgct |
255 |
Q |
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| T |
32545254 |
acttgtgccttgtaaggagatatgattcctatgct |
32545220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 32570472 - 32570235
Alignment:
| Q |
21 |
catacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatctaacagtagatattattatgag |
120 |
Q |
| |
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||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||||| ||||||||| ||||| ||||||||||| | |
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| T |
32570472 |
catacctagccctagtgattgccacattaactctttgtctattggaaagaaaccccacttttccactctcatttgatcttacagttgatattattattat |
32570373 |
T |
|
| Q |
121 |
gtcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggatccgaaacc---atgtactgcttcactctctcttggatttca |
217 |
Q |
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||||| |||||||||||||||||||||||||| |||||| ||| ||||||| | ||| |||||| ||||||||||| ||| ||||||| |||||| |
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| T |
32570372 |
atcttcctcgccgccttgaaaaccatcaacagaccggacactaacagagaagtcggtatcagaaaccgcaatgtactgcttaactttctcttgaatttca |
32570273 |
T |
|
| Q |
218 |
tgaacttgcgccttgtatggagatatgatccctatgct |
255 |
Q |
| |
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|||||| || || |||||||||||||| |||||||| |
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| T |
32570272 |
aaaacttgagcattatatggagatatgatgcctatgct |
32570235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 32524436 - 32524579
Alignment:
| Q |
21 |
catacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatctaacagtagatattattatgag |
120 |
Q |
| |
|
|||||||||||||||| || | ||||| | |||||||||||| |||||||||||||| || |||| ||||||||| ||||||||||||||||| | |
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| T |
32524436 |
catacctagccctagtcatagccacatttgctctttgtctatttgaaagaaaaccaacattaccacttccatttgatctcacagtagatattattataat |
32524535 |
T |
|
| Q |
121 |
gtcttcttcgccgccttgaaaaccatcaacagaacggacattaa |
164 |
Q |
| |
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||||| || |||||||| ||||| ||||||||||| ||||||| |
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| T |
32524536 |
atcttcctcaccgccttggaaaccgtcaacagaacgaacattaa |
32524579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 32613165 - 32613405
Alignment:
| Q |
22 |
atacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatctaacagtagatattattatgagg |
121 |
Q |
| |
|
|||||||||||| || || | |||||||| |||||||||||| ||||||||||| || || |||| ||||||||| ||||||||||||||||| | |
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| T |
32613165 |
atacctagcccttgtcatcgcaacattagctctttgtctatttgaaagaaaaccgacattaccactcccatttgatctcacagtagatattattataata |
32613264 |
T |
|
| Q |
122 |
tcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggatccgaaac---catgtactgcttcactctctcttggatttcat |
218 |
Q |
| |
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|| || ||||| ||||| || ||||||| |||||| ||| | | || |||| | ||| ||||| |||||||||| ||| ||||||||||||||| |
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| T |
32613265 |
tcctcctcgccaccttggaatccatcaatagaacgaacacttacagaaaagtctgtatcagaaactgaagtgtactgcttaactttctcttggatttcat |
32613364 |
T |
|
| Q |
219 |
gaacttgcgccttgtatggagatatgatccctatgctaact |
259 |
Q |
| |
|
|||||| || || |||||||||||||| || || |||||| |
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| T |
32613365 |
aaacttgagcattatatggagatatgattccaatactaact |
32613405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 32530893 - 32530960
Alignment:
| Q |
95 |
gatctaacagtagatattattatgaggtcttcttcgccgccttgaaaaccatcaacagaacggacatt |
162 |
Q |
| |
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||||| ||||||||||||||||| | |||||| || || ||||||||||||||||||||||| ||||| |
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| T |
32530893 |
gatctcacagtagatattattataatgtcttcctcaccaccttgaaaaccatcaacagaacgaacatt |
32530960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 32644456 - 32644593
Alignment:
| Q |
22 |
atacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatctaacagtagatattattatgagg |
121 |
Q |
| |
|
|||||||||||| || |||| |||||||| |||||||||||| |||||||||||||| || |||| || |||| || |||||||||||||| | |
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| T |
32644456 |
atacctagcccttgtcattgcaacattagctctttgtctatttgaaagaaaaccaacattaccac-----ttccatctcacggtagatattattataata |
32644550 |
T |
|
| Q |
122 |
tcttcttcgccgccttgaaaaccatcaacagaacggacattaa |
164 |
Q |
| |
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||||| || | ||||| ||||| ||||||||||| ||||||| |
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| T |
32644551 |
tcttcctcacgaccttggaaaccgtcaacagaacgaacattaa |
32644593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 28855529 - 28855592
Alignment:
| Q |
122 |
tcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggatccgaaa |
185 |
Q |
| |
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|||||||| ||||||||||| ||||| |||||||| ||| ||| |||||||||||||| |||| |
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| T |
28855529 |
tcttcttcaccgccttgaaagccatcgacagaacgaacactaacagagaagttaggatcagaaa |
28855592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 9552286 - 9552234
Alignment:
| Q |
148 |
aacagaacggacattaatcgagaagttaggatccgaaaccatgtactgcttca |
200 |
Q |
| |
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|||| |||||||| ||| || ||||||||||| ||||||||||||||||||| |
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| T |
9552286 |
aacaaaacggacactaacagaaaagttaggatctgaaaccatgtactgcttca |
9552234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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