View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_high_40 (Length: 266)
Name: NF8008_high_40
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 24033414 - 24033648
Alignment:
| Q |
18 |
agtgtgcgtacctaaagatgaatggataataagggaacnnnnnnncataatcaaaggtaatttggatgagaaaggcatggtttaaaattatggctttttt |
117 |
Q |
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| T |
24033414 |
agtgtgcgtacctaaagatgaatggataataagggaacaaaaaaacataatcaaaggtaatttggatgagaaaggcatggtttaaaattatggcttttat |
24033513 |
T |
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| Q |
118 |
aagatttgtgcattgtgtatcaagaattaaggaatagaatgcaaaaaatgaagaatgtatggtttggaagatatgcgaacaaatgcaccaaagacttggt |
217 |
Q |
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| T |
24033514 |
aagatttgtgcattgtgtatcaagaattaaggaatagaatgtaaaaaatgaagaatgtatggtttggaagatatgcgaacaaatgcaccaaagacttggt |
24033613 |
T |
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| Q |
218 |
tatatataagtaagaaatggaacacagtgtctctg |
252 |
Q |
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| T |
24033614 |
tatatataagtaagaaatggaacacagtgtctctg |
24033648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 24038879 - 24039111
Alignment:
| Q |
18 |
agtgtgcgtacctaaagatgaatggataataagggaacnnnnnnncataatcaaaggtaatttggatgagaaaggcatggtttaaaattatggctttttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
24038879 |
agtgtgcgtacctaaagatgaatggataataagggaacaaaaaaacataatcaaaggtaatttggatgagaaaggcatggtttaaaattctggcttttat |
24038978 |
T |
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| Q |
118 |
aagatttgtgcattgtgtatcaagaattaaggaatagaatgcaaaaaatgaagaatgtatggtttggaaga--tatgcgaacaaatgcaccaaagacttg |
215 |
Q |
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| T |
24038979 |
aagatttgtgtattgtgtatcaagaattaaggaatagaatgtaaaaaatgaagaatgtat--atgcgaacaactatgtgta-aaaggcaccaaa-acatg |
24039074 |
T |
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| Q |
216 |
gttatatataagtaagaaatggaacacagtgtctctg |
252 |
Q |
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| T |
24039075 |
gttatatataagtaagaaatggaacacagtgtctctg |
24039111 |
T |
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