View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_high_45 (Length: 243)
Name: NF8008_high_45
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4406018 - 4406246
Alignment:
| Q |
1 |
gcttccatcattcacaaaa-aatataatacaaattaatcattgatattttcataccttcaaattgtgtttgtaattcatcaaaccagtggtggtgaggtc |
99 |
Q |
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| T |
4406018 |
gcttccatcattcacaaaaaaatataatacaaattaatcattgatattttcataccttcaaattgtgtttgtaattcatcaaaccagtggtggtgaggtc |
4406117 |
T |
|
| Q |
100 |
tcatgcaaatattgttcatgatatgcacatgtgtgaaagagttttggagaaataattgtcaaaattttactgaagttgtatctaaatgtaaaagattaac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4406118 |
tcatgcaaatattgttcatgatatgcacatgtgtgaaagagttttggagaaataatagtcaaaattttactgaagttgtatctaaatgtaaaagattaac |
4406217 |
T |
|
| Q |
200 |
ttaaaagatgagttaattttgttgtttat |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4406218 |
ttaaaagatgagttaattttgttgtttat |
4406246 |
T |
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