View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_high_48 (Length: 239)
Name: NF8008_high_48
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 44144673 - 44144880
Alignment:
| Q |
18 |
ggattaaaccagataaagttttgtacatactggaatttgacatcatagccttacaaaacgaggcgttattatctaatttttgcaacaaaaatatttactt |
117 |
Q |
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| T |
44144673 |
ggattaaaccagataaagttttgtacatactggaattcgacatcatagccttaggaaacaaggcgttattatctaatttttgcaacaaaaatatttactt |
44144772 |
T |
|
| Q |
118 |
ccatgacatcatcaatgcaaagaaacgttactgctaaaaggaaaacaagacaaagttaaaaggctccggggattagtgtttcttgcagctggttttgtag |
217 |
Q |
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||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
44144773 |
ccacgacatcatcagtgcaaagaaacgtaactgctaaaaggaaaacaagacaaagttaaaaggctccggggattagtgtttcttggagctggtttggtag |
44144872 |
T |
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| Q |
218 |
caccacca |
225 |
Q |
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|||||||| |
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| T |
44144873 |
caccacca |
44144880 |
T |
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