View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8008_high_50 (Length: 235)

Name: NF8008_high_50
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8008_high_50
NF8008_high_50
[»] chr5 (6 HSPs)
chr5 (16-217)||(6596741-6596942)
chr5 (151-217)||(8740472-8740538)
chr5 (161-217)||(8740557-8740613)
chr5 (145-217)||(31193996-31194067)
chr5 (145-217)||(31194164-31194235)
chr5 (145-197)||(14076868-14076920)
[»] chr7 (5 HSPs)
chr7 (145-215)||(19059929-19059999)
chr7 (169-217)||(10092342-10092390)
chr7 (145-201)||(28547531-28547587)
chr7 (169-217)||(41097654-41097702)
chr7 (145-217)||(48006323-48006394)
[»] chr4 (3 HSPs)
chr4 (146-217)||(22536878-22536948)
chr4 (147-208)||(10031771-10031832)
chr4 (146-201)||(1856681-1856736)
[»] scaffold0025 (1 HSPs)
scaffold0025 (147-204)||(12981-13038)
[»] chr3 (1 HSPs)
chr3 (145-217)||(43797383-43797454)
[»] chr1 (1 HSPs)
chr1 (146-193)||(48913463-48913510)
[»] chr2 (2 HSPs)
chr2 (147-196)||(18259226-18259275)
chr2 (145-197)||(22563260-22563312)
[»] chr8 (1 HSPs)
chr8 (145-197)||(6911228-6911280)
[»] chr6 (4 HSPs)
chr6 (150-206)||(12257344-12257400)
chr6 (150-206)||(12258015-12258071)
chr6 (145-197)||(22748638-22748690)
chr6 (145-197)||(33277356-33277408)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 6596741 - 6596942
Alignment:
Q  16 aatattaggtttttatattggatctaacttaccttataaaaatagcttatagggcaagatgcatcactctttataaacttagcttgattttacgtgagat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6596741 aatattaggtttttatattggatctaacttaccttataaaaatagcttatagggcaagatgtatcactctttataaacttagcttgattttacgtgagat 6596840  T
Q  116 catgtgagtttttgtcaacttannnnnnnaattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaaatagggtaaat 215  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  6596841 catgtgagtttttgtcaacttaattttttaattttaaatctcaacccttgaatattttttagccacatgtcattcatccaagaccttaaatatggtaaat 6596940  T
Q  216 gg 217  Q
    ||    
T  6596941 gg 6596942  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 8740538 - 8740472
Alignment:
Q  151 aaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaaatagggtaaatgg 217  Q
    ||||||||||| |||||| |||||| |||||||||||||||||||| ||| ||||| ||||||||||    
T  8740538 aaatctcaaccattgaatgttttttggccacatgtcattcatccaataccctaaatggggtaaatgg 8740472  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 8740557 - 8740613
Alignment:
Q  161 ccttgaatattttttagccacatgtcattcatccaaaaccttaaatagggtaaatgg 217  Q
    |||||||| |||||| |||||||||||||||||||| ||||||||| || |||||||    
T  8740557 ccttgaatgttttttggccacatgtcattcatccaagaccttaaatgggataaatgg 8740613  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 31194067 - 31193996
Alignment:
Q  145 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaaatagggtaaatgg 217  Q
    ||||| ||||||||||| ||| ||||||||| |||||||||| | ||||| ||||||||||| | ||||||||    
T  31194067 aatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatcc-aaaccttaaatggagtaaatgg 31193996  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 31194164 - 31194235
Alignment:
Q  145 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaaatagggtaaatgg 217  Q
    ||||| ||||||||||| ||| ||||||||| |||||||||| | ||||| ||||||||||| | ||||||||    
T  31194164 aatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatcc-aaaccttaaatggagtaaatgg 31194235  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 14076868 - 14076920
Alignment:
Q  145 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaa 197  Q
    ||||| ||||||||||| || |||||||||| |||||||||| | ||||||||    
T  14076868 aatttaaaatctcaaccgttaaatatttttttgccacatgtcttgcatccaaa 14076920  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 19059929 - 19059999
Alignment:
Q  145 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaaatagggtaaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||| ||||||||    
T  19059929 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaatattttaaatggggtaaat 19059999  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 10092342 - 10092390
Alignment:
Q  169 attttttagccacatgtcattcatccaaaaccttaaatagggtaaatgg 217  Q
    |||||||  ||||||||||||||||||| ||||||||| ||||||||||    
T  10092342 attttttttccacatgtcattcatccaagaccttaaatggggtaaatgg 10092390  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 28547587 - 28547531
Alignment:
Q  145 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaaacct 201  Q
    ||||||||||||| |||||| | |||||||| | |||||||| | ||||||||||||    
T  28547587 aattttaaatctccacccttcattatttttttgacacatgtcttgcatccaaaacct 28547531  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 41097654 - 41097702
Alignment:
Q  169 attttttagccacatgtcattcatccaaaaccttaaatagggtaaatgg 217  Q
    ||||||| | |||||||||||||||||| | ||||||| ||||||||||    
T  41097654 atttttttgtcacatgtcattcatccaagatcttaaatggggtaaatgg 41097702  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 48006323 - 48006394
Alignment:
Q  145 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaaatagggtaaatgg 217  Q
    ||||| ||||||||||| || |||||||||| |||||||||  | |||||||| || ||||||| ||||||||    
T  48006323 aatttaaaatctcaaccgttaaatatttttttgccacatgttttgcatccaaatcc-taaatagagtaaatgg 48006394  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 22536878 - 22536948
Alignment:
Q  146 attttaaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaaatagggtaaatgg 217  Q
    ||||||||||| || | |||||| ||||||| ||||||||||||||||||| ||| ||||| ||||||||||    
T  22536878 attttaaatctgaatcattgaatttttttta-ccacatgtcattcatccaacaccctaaatggggtaaatgg 22536948  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 10031832 - 10031771
Alignment:
Q  147 ttttaaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaaatag 208  Q
    |||||||||| || | |||||| |||||| ||||||| ||||||||||||||| ||||||||    
T  10031832 ttttaaatctaaatcgttgaatttttttttgccacatatcattcatccaaaacgttaaatag 10031771  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 1856681 - 1856736
Alignment:
Q  146 attttaaatctcaacccttgaatattttttagccacatgtcattcatccaaaacct 201  Q
    ||||||||||| |||| ||||||  ||||| |||||||||||||||||||| ||||    
T  1856681 attttaaatctgaaccattgaatccttttttgccacatgtcattcatccaagacct 1856736  T

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Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 12981 - 13038
Alignment:
Q  147 ttttaaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaa 204  Q
    ||||||||||||||||| |||| || ||| |||||||||| ||||||||| |||||||    
T  12981 ttttaaatctcaaccctcgaatcttcttttgccacatgtctttcatccaagaccttaa 13038  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 43797454 - 43797383
Alignment:
Q  145 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaaatagggtaaatgg 217  Q
    ||||| ||||||||||| ||| ||||||||| |||||||||| | ||||| ||||||||||| | ||||||||    
T  43797454 aatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatcc-aaaccttaaatggagtaaatgg 43797383  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 48913510 - 48913463
Alignment:
Q  146 attttaaatctcaacccttgaatattttttagccacatgtcattcatc 193  Q
    ||||||||||| |||||||||||||| ||| |||||||||||| ||||    
T  48913510 attttaaatcttaacccttgaatattcttttgccacatgtcatacatc 48913463  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 18259226 - 18259275
Alignment:
Q  147 ttttaaatctcaacccttgaatattttttagccacatgtcattcatccaa 196  Q
    |||||||| | |||| |||||| |||||| ||||||||||||||||||||    
T  18259226 ttttaaatatgaaccattgaatctttttttgccacatgtcattcatccaa 18259275  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 22563312 - 22563260
Alignment:
Q  145 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaa 197  Q
    ||||| ||||||||||| || |||||||||| |||||||||| | ||||||||    
T  22563312 aatttaaaatctcaaccgttaaatatttttttgccacatgtcttgcatccaaa 22563260  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 6911228 - 6911280
Alignment:
Q  145 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaa 197  Q
    ||||| ||||||||||| ||| ||||||||| |||||||||| | ||||||||    
T  6911228 aatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaa 6911280  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 12257400 - 12257344
Alignment:
Q  150 taaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaaat 206  Q
    |||||||||||| |||||| |||||| ||||| |||| ||||||||| ||| |||||    
T  12257400 taaatctcaaccattgaatctttttttgccacttgtctttcatccaagaccctaaat 12257344  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 12258015 - 12258071
Alignment:
Q  150 taaatctcaacccttgaatattttttagccacatgtcattcatccaaaaccttaaat 206  Q
    |||||||||||| || ||| |||||| ||||| |||| ||||||||||||| |||||    
T  12258015 taaatctcaaccattaaatctttttttgccacttgtctttcatccaaaaccctaaat 12258071  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 22748690 - 22748638
Alignment:
Q  145 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaa 197  Q
    ||||| ||||||||||| ||| ||||||||| |||||||||| | ||||||||    
T  22748690 aatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaa 22748638  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 33277408 - 33277356
Alignment:
Q  145 aattttaaatctcaacccttgaatattttttagccacatgtcattcatccaaa 197  Q
    ||||| ||||||||||| || |||||||||| |||||||||| | ||||||||    
T  33277408 aatttaaaatctcaaccattaaatatttttttgccacatgtcttgcatccaaa 33277356  T

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