View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8008_low_1 (Length: 955)

Name: NF8008_low_1
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8008_low_1
NF8008_low_1
[»] chr1 (8 HSPs)
chr1 (13-941)||(11042547-11043467)
chr1 (100-271)||(11030846-11031017)
chr1 (178-302)||(10931511-10931635)
chr1 (846-924)||(11006304-11006382)
chr1 (16-92)||(11027670-11027746)
chr1 (846-917)||(10931676-10931747)
chr1 (851-917)||(10977090-10977156)
chr1 (242-306)||(11032582-11032646)
[»] chr4 (2 HSPs)
chr4 (597-769)||(32924583-32924755)
chr4 (83-263)||(32924253-32924433)
[»] chr3 (1 HSPs)
chr3 (612-733)||(168000-168121)
[»] chr5 (1 HSPs)
chr5 (660-712)||(24449674-24449726)


Alignment Details
Target: chr1 (Bit Score: 838; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 838; E-Value: 0
Query Start/End: Original strand, 13 - 941
Target Start/End: Original strand, 11042547 - 11043467
Alignment:
Q  13 tttatcagatcgaaagggaaaaaa-tgaaatagtcatgttagtaaaacagaaacacccataaaactctgtcagtagatcaacttgctgatgaagatctcg 111  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11042547 tttatcagatcgaaagggaaaaaaatgaaatagtcatgttagtaaaacagaaacacccataaaactctgtcagtagatcaacttgctggtgaagatctcg 11042646  T
Q  112 aatcgttagttcaatttgcatggcacatgcaatctggacatggaaagctatatgtggagtcgttaggccttttgagctcaacacccttggaatcactgtg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11042647 aatcgttagttcaatttgcatggcacatgcaatctggacatggaaagctatatgtggagtcattaggccttttgagctcaacacccttggaatcactgtg 11042746  T
Q  212 tgacctcatgctcagcaattggtgcttaagacttttccatctataaagtaatcaaattagagtcagatactatgtacaaataataagataaaatcctaaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11042747 tgacctcatgctcagcaattggtgcttaagacttttccatctataaagtaatcaaattagagtcagatactatgtacaaataataagataaaatcctaaa 11042846  T
Q  312 tgcatagtgctaaaacaacaaggatcatctttttataaaaaggaatgctaccaattgcattaattttataaaacatgttttcaagtgaatttcatcccgc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  11042847 tgcatagtgctaaaacaacaaggatcatctttttataaaaaggaatgctacaaattgcattaattttataaaccatgttttcaagtgagtttcatcccgc 11042946  T
Q  412 acaatcaacaacaacaacaataatagtaataatcccaatcatatcttctccccaaaaaattaatcgcctgggtatttttccttttatttgtattcatgtc 511  Q
    |||||||||         ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11042947 acaatcaac---------aataataataataatctcaatcatatcttctccccaaaaaattaatcgcctgggtatttttgcttttatttgtattcatgtc 11043037  T
Q  512 tcaattatcacaatggtcttgaactgaaagaaatatacactacagtacagacaatacatacccaatgttggtactatcgaagagtaatgccaacttccgc 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11043038 tcaattatcacaatggtcttgaactgaaagaaatatacactacagtacagacaatacatacccaatgttggtactatcgaagagtaatgccaacttccgc 11043137  T
Q  612 ttatcaggcttgattgtcttagagtgtccaccatacaagtatctccggtggcccagtagaaaatgagggaagttaccaccctgagttgtgacaaacacct 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11043138 ttatcaggcttgattgtcttagagtgtccaccatacaagtatctccggtggcccagtagaaaatgagggaagttaccaccctgagttgtgacaaacacct 11043237  T
Q  712 cgctatgaagacaaacagtatagtctatggcagccatcctggaagaataattctagaagcaactcaagtcaagattacagtacttaatcttacgagagcg 811  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||     
T  11043238 cgctatgaagacaaacagtatagtctatggcagccatcctggaagaataattctagaagcaactcaagtcaacattacagtatttaatcttacgagagca 11043337  T
Q  812 tgagtgggatagaatactactacataccttaaatggggcaagttcctcctcagatgctaaagtctccttggtatgtaaattaggaaacatttcccttaga 911  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11043338 tgagtgggatagaatactactacataccttaaatggggcaagttcctcctcagatgctaaagtctccttggtatgtaaattaggaaacatttcccttaga 11043437  T
Q  912 ggggccatcattttctcgccattatatatt 941  Q
    ||||||||  ||||||||||||||||||||    
T  11043438 ggggccattgttttctcgccattatatatt 11043467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 100 - 271
Target Start/End: Complemental strand, 11031017 - 11030846
Alignment:
Q  100 atgaagatctcgaatcgttagttcaatttgcatggcacatgcaatctggacatggaaagctatatgtggagtcgttaggccttttgagctcaacaccctt 199  Q
    |||||||||  ||||| | | ||| ||||||||||||||||||||||||  |||||||| ||||| ||||||| ||| |||||||||||||||| |||||    
T  11031017 atgaagatccagaatcataaattccatttgcatggcacatgcaatctgggtatggaaagatatatatggagtcattatgccttttgagctcaactccctt 11030918  T
Q  200 ggaatcactgtgtgacctcatgctcagcaattggtgcttaagacttttccatctataaagtaatcaaattag 271  Q
    |||||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  11030917 ggaatcactgtgtgacatcatgctctgcaattggtgcttgagaattttccatctataaagtattcaagttag 11030846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 178 - 302
Target Start/End: Original strand, 10931511 - 10931635
Alignment:
Q  178 gccttttgagctcaacacccttggaatcactgtgtgacctcatgctcagcaattggtgcttaagacttttccatctataaagtaatcaaattagagtcag 277  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||| |||| | |||||| ||| |||||||||||||||||| |||||||||||| |     
T  10931511 gccttttgagctcaactcccttggaatcactttgtgacttcatgctctgcaaatagtgcttgagaattttccatctataaagtattcaaattagagttaa 10931610  T
Q  278 atactatgtacaaataataagataa 302  Q
    || ||   |||||||||||||||||    
T  10931611 attcttcctacaaataataagataa 10931635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 846 - 924
Target Start/End: Complemental strand, 11006382 - 11006304
Alignment:
Q  846 ggggcaagttcctcctcagatgctaaagtctccttggtatgtaaattaggaaacatttcccttagaggggccatcattt 924  Q
    |||||||||||||||| ||||||| || ||||||| ||||| || |||||||||||||||||| |||||||||| ||||    
T  11006382 ggggcaagttcctccttagatgctcaattctccttagtatgcaagttaggaaacatttcccttggaggggccattattt 11006304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 11027670 - 11027746
Alignment:
Q  16 atcagatcgaaagggaaaaaatgaaatagtcatgttagtaaaacagaaacacccataaaactctgtcagtagatcaa 92  Q
    ||||||| |||| ||||||||||||| |||| ||| ||||||||| |||| ||||||||||||| ||||||||||||    
T  11027670 atcagatggaaaaggaaaaaatgaaagagtcgtgtcagtaaaacacaaactcccataaaactctctcagtagatcaa 11027746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 917
Target Start/End: Original strand, 10931676 - 10931747
Alignment:
Q  846 ggggcaagttcctcctcagatgctaaagtctccttggtatgtaaattaggaaacatttcccttagaggggcc 917  Q
    |||| ||||||||| |||||||||| | ||| ||| ||||| || |||||||||||||||||||||||||||    
T  10931676 ggggaaagttcctcttcagatgctatattcttcttagtatgcaagttaggaaacatttcccttagaggggcc 10931747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 851 - 917
Target Start/End: Original strand, 10977090 - 10977156
Alignment:
Q  851 aagttcctcctcagatgctaaagtctccttggtatgtaaattaggaaacatttcccttagaggggcc 917  Q
    |||||||||||||| ||||||| ||  ||| ||||| || |||||||||||||||||||||||||||    
T  10977090 aagttcctcctcaggtgctaaattcgtcttagtatgcaagttaggaaacatttcccttagaggggcc 10977156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 11032646 - 11032582
Alignment:
Q  242 acttttccatctataaagtaatcaaattagagtcagatactatgtacaaataataagataaaatc 306  Q
    |||||||||| |||||||||||||||||||||| ||||  | | ||||||| |||||||| ||||    
T  11032646 acttttccatgtataaagtaatcaaattagagttagattatttttacaaatgataagatagaatc 11032582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 7e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 597 - 769
Target Start/End: Original strand, 32924583 - 32924755
Alignment:
Q  597 aatgccaacttccgcttatcaggcttgattgtcttagagtgtccaccatacaagtatctccggtggcccagtagaaaatgagggaagttaccaccctgag 696  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||| || |||||||||||||| |    
T  32924583 aatgctaacttccgcttatcaggcttaattgtcttagagtgtccaccatacaagtatcttctgtggcccagcagaaaatggggaaagttaccaccctggg 32924682  T
Q  697 ttgtgacaaacacctcgctatgaagacaaacagtatagtctatggcagccatcctggaagaataattctagaa 769  Q
    |||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  32924683 ttgtgacaaacacctcactatgaagacaaacagtgtaatctatagcagccatcctggaagaataattctagaa 32924755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 83 - 263
Target Start/End: Original strand, 32924253 - 32924433
Alignment:
Q  83 agtagatcaacttgctgatgaagatctcgaatcgttagttcaatttgcatggcacatgcaatctggacatggaaagctatatgtggagtcgttaggcctt 182  Q
    ||||||||||  ||||||||||||| | |||||||  |||| ||| ||| ||||||| || ||||||||||||||||| ||| | ||||| || || |||    
T  32924253 agtagatcaagctgctgatgaagattttgaatcgtcggttctattggcacggcacatacattctggacatggaaagctgtatatagagtcatttggtctt 32924352  T
Q  183 ttgagctcaacacccttggaatcactgtgtgacctcatgctcagcaattggtgcttaagacttttccatctataaagtaat 263  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||| | |||| |||||||  ||||||||    
T  32924353 ttgagctcaactcccttggaatcactgtgtgacctcatgttcagcagttggcgcttgaaacttctccatctggaaagtaat 32924433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 612 - 733
Target Start/End: Complemental strand, 168121 - 168000
Alignment:
Q  612 ttatcaggcttgattgtcttagagtgtccaccatacaagtatctccggtggcccagtagaaaatgagggaagttaccaccctgagttgtgacaaacacct 711  Q
    |||||||| || |||||||| || || ||||||||||  ||||||| ||| ||||  |  || ||||| || || |||||||||||||| ||||| || |    
T  168121 ttatcaggtttaattgtctttgaatgcccaccatacatatatctcctgtgacccatcaagaagtgaggaaaatttccaccctgagttgtaacaaatactt 168022  T
Q  712 cgctatgaagacaaacagtata 733  Q
    | ||||||||||||||||||||    
T  168021 cactatgaagacaaacagtata 168000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 660 - 712
Target Start/End: Complemental strand, 24449726 - 24449674
Alignment:
Q  660 tggcccagtagaaaatgagggaagttaccaccctgagttgtgacaaacacctc 712  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||| |||||    
T  24449726 tggcccattagaaaatgagggaagttaccaccttgggttgttacaaaaacctc 24449674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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