View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_11 (Length: 465)
Name: NF8008_low_11
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 35 - 345
Target Start/End: Original strand, 45441259 - 45441560
Alignment:
| Q |
35 |
tagttagcagagaagaatgaagccgagggggagattgagaaagagaaagatgaaggaagatttaggcttactcaacaacagcaagaggtggtttactacg |
134 |
Q |
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| T |
45441259 |
tagttagcagagaagaatgaagacgagggggagattgaga------aagatgaaggaagatttaggcttactcaacaacagcaagaggtggtttactacg |
45441352 |
T |
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| Q |
135 |
gggcttatggcgatgatatccctgatcccaaatgtggtattttgagccggtgaggtttgaggttactgtaccgagaaaagtatcatcatcatcatgagaa |
234 |
Q |
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| T |
45441353 |
gggcttatggcgatgatatccctgatcccaaatgtggtattttgagccggtgaggtttgaggttactgtcccgagaaaagt---atcatcatcatgagaa |
45441449 |
T |
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| Q |
235 |
ttggagagtagtcctttgagattttgagcaactgtgaagtgagacctcccactacggcgcttgtggtgggccacagccaatttcctattctgtcgtccct |
334 |
Q |
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| T |
45441450 |
ttggagagtagtcctttgagattttgagcaactgtgaagtgagacctcccactacggcgcttgtggtgggcaacagccaatttcctattctgtcgtccat |
45441549 |
T |
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| Q |
335 |
gaccttcctac |
345 |
Q |
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| T |
45441550 |
gaccttcctac |
45441560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 369 - 447
Target Start/End: Original strand, 45441581 - 45441659
Alignment:
| Q |
369 |
catgtgagtcttacttaatagcaaagtgatattatagttatacaatagaatgtaagtgaatacatacatatgtataaag |
447 |
Q |
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| T |
45441581 |
catgtgagtcttacttaatagcaaagtgatattatagttatacaatagaatgtaagtgaatacatacatatgtataaag |
45441659 |
T |
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