View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_12 (Length: 459)
Name: NF8008_low_12
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 27739976 - 27740424
Alignment:
| Q |
1 |
tatatacctcaaaagcttaagctaaagaaataagtatggctacaatacaa-ggagtatattccaagattacaacaagagattgactaaagca-------t |
92 |
Q |
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|||||||| |||||||| |||||||||||| ||| |||||||||||| || |||||||||||||| |||| |||||||||||||||| | || | |
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| T |
27739976 |
tatataccgcaaaagctaaagctaaagaaagaagcatggctacaatataatggagtatattccaaaattataacaagagattgactacaacaacatatgt |
27740075 |
T |
|
| Q |
93 |
atgtggtcaagagctagagacagtagtggtgcgcatcatatccttaaattcatgaaaatcaacacgaccatcatggttggtatcaacagacaaaatcatt |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27740076 |
atgtggtcaagagctagagacagtagtggtgcgcatcatatccttaaattcatgaaaatcaacacgaccatcatggttggtatcaacagacaaaatcatt |
27740175 |
T |
|
| Q |
193 |
ctttgaacattatcaatcaagttcccttccacaagtccaagcttccctaaaacaacttgcaattccttagctgatatgtaaccatcaccatcttcatcaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27740176 |
ctttgaacattatcaatcaagttcccttccacaagtccaagcttccctaaaacaacttgcaattccttagctgatatgtaaccatcaccatcttcatcaa |
27740275 |
T |
|
| Q |
293 |
acaccttgaatgcttcccatagatcttcattttgtgtttcctcatcagtttctgctgccactgaaaaatatgtatcccccagtgactcgtgcaatcccac |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27740276 |
acaccttgaatgcttcccatagatcttcattttgtgtttcctcatcagtttctgctgccactgaaaaatatgtatcccccagtgactcgtgcaatcccac |
27740375 |
T |
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| Q |
393 |
gaaatcttcgtacgttagtcctacgttgcccggctttatgtatgacctg |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27740376 |
gaaatcttcgtacgttagtcctacgttgcccggctttatgtatgacctg |
27740424 |
T |
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