View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8008_low_13 (Length: 454)

Name: NF8008_low_13
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8008_low_13
NF8008_low_13
[»] chr7 (44 HSPs)
chr7 (279-439)||(1249460-1249620)
chr7 (11-197)||(1249618-1249811)
chr7 (166-302)||(45003007-45003145)
chr7 (156-314)||(28517387-28517547)
chr7 (156-299)||(40726580-40726725)
chr7 (156-314)||(5825120-5825280)
chr7 (158-300)||(21326940-21327084)
chr7 (156-288)||(45613942-45614076)
chr7 (227-309)||(38766176-38766258)
chr7 (238-309)||(38832154-38832225)
chr7 (156-248)||(48539094-48539188)
chr7 (156-288)||(19277164-19277300)
chr7 (192-300)||(45974737-45974845)
chr7 (156-300)||(25187031-25187177)
chr7 (238-315)||(36931887-36931963)
chr7 (149-249)||(23037457-23037559)
chr7 (156-247)||(27521385-27521478)
chr7 (156-269)||(982841-982956)
chr7 (192-268)||(27027768-27027844)
chr7 (102-162)||(30216038-30216098)
chr7 (156-300)||(4501120-4501266)
chr7 (156-268)||(24527482-24527596)
chr7 (156-247)||(43856788-43856881)
chr7 (104-148)||(25186918-25186962)
chr7 (209-300)||(2904242-2904332)
chr7 (156-300)||(10904979-10905125)
chr7 (209-276)||(32584485-32584552)
chr7 (178-253)||(38839234-38839311)
chr7 (156-259)||(41117870-41117975)
chr7 (251-300)||(2520918-2520967)
chr7 (181-247)||(5714954-5715022)
chr7 (209-250)||(32336318-32336359)
chr7 (156-249)||(22197899-22197993)
chr7 (156-249)||(22239828-22239922)
chr7 (209-253)||(41071756-41071800)
chr7 (213-276)||(34856750-34856813)
chr7 (115-157)||(24566960-24567002)
chr7 (104-162)||(28517269-28517327)
chr7 (195-300)||(9281277-9281382)
chr7 (195-300)||(9292248-9292353)
chr7 (97-162)||(19277360-19277425)
chr7 (98-162)||(2904432-2904496)
chr7 (114-162)||(21326830-21326878)
chr7 (102-162)||(27521538-27521598)
[»] chr4 (41 HSPs)
chr4 (156-315)||(50001026-50001187)
chr4 (156-316)||(53619431-53619593)
chr4 (156-318)||(23255556-23255720)
chr4 (156-315)||(3329842-3330003)
chr4 (156-298)||(39001260-39001404)
chr4 (156-305)||(4419120-4419270)
chr4 (156-303)||(55933560-55933709)
chr4 (156-309)||(48657015-48657168)
chr4 (156-300)||(600792-600938)
chr4 (156-300)||(30940832-30940978)
chr4 (193-302)||(31846962-31847071)
chr4 (169-295)||(8738071-8738199)
chr4 (156-286)||(50464396-50464528)
chr4 (210-300)||(26521350-26521440)
chr4 (226-300)||(40392726-40392800)
chr4 (156-300)||(16955321-16955467)
chr4 (170-258)||(23242803-23242893)
chr4 (206-301)||(47585160-47585255)
chr4 (213-299)||(12053329-12053415)
chr4 (226-300)||(23604951-23605025)
chr4 (104-162)||(30940721-30940779)
chr4 (156-315)||(46440989-46441150)
chr4 (226-315)||(12917895-12917984)
chr4 (239-308)||(41372253-41372322)
chr4 (149-300)||(132246-132399)
chr4 (156-302)||(34107796-34107944)
chr4 (159-253)||(54190954-54191050)
chr4 (200-276)||(1041310-1041386)
chr4 (192-276)||(50442617-50442701)
chr4 (156-236)||(52403868-52403948)
chr4 (213-276)||(50463102-50463165)
chr4 (104-162)||(50000907-50000965)
chr4 (156-288)||(53170386-53170520)
chr4 (156-239)||(56462206-56462291)
chr4 (199-276)||(9601095-9601171)
chr4 (105-156)||(23255777-23255828)
chr4 (319-390)||(35181763-35181834)
chr4 (199-247)||(3698685-3698733)
chr4 (156-247)||(34213534-34213626)
chr4 (127-163)||(45760839-45760875)
chr4 (209-249)||(49354225-49354265)
[»] chr3 (38 HSPs)
chr3 (156-316)||(26772603-26772765)
chr3 (156-315)||(38670980-38671141)
chr3 (160-300)||(39583333-39583475)
chr3 (156-300)||(53785570-53785716)
chr3 (156-300)||(32546656-32546802)
chr3 (156-301)||(44198627-44198774)
chr3 (156-256)||(13582415-13582517)
chr3 (199-276)||(26276500-26276577)
chr3 (320-388)||(14959178-14959246)
chr3 (156-269)||(26856862-26856977)
chr3 (320-388)||(39491083-39491151)
chr3 (156-249)||(52411991-52412086)
chr3 (156-300)||(46940873-46941019)
chr3 (218-303)||(50657235-50657320)
chr3 (156-300)||(44694-44843)
chr3 (156-248)||(38145969-38146063)
chr3 (181-276)||(4669788-4669885)
chr3 (156-249)||(38978899-38978994)
chr3 (209-301)||(49017827-49017919)
chr3 (156-300)||(4763893-4764038)
chr3 (156-272)||(37133099-37133217)
chr3 (156-300)||(52741612-52741758)
chr3 (226-300)||(8592002-8592076)
chr3 (149-255)||(5338552-5338657)
chr3 (192-300)||(4472923-4473031)
chr3 (192-236)||(53502592-53502636)
chr3 (169-300)||(3643014-3643145)
chr3 (113-148)||(7502002-7502037)
chr3 (115-162)||(26856755-26856802)
chr3 (104-162)||(26772825-26772883)
chr3 (104-162)||(39583211-39583269)
chr3 (104-162)||(44198834-44198892)
chr3 (212-301)||(2601689-2601778)
chr3 (113-162)||(38670872-38670920)
chr3 (209-257)||(26393841-26393889)
chr3 (114-162)||(37132991-37133039)
chr3 (16-56)||(39491212-39491252)
chr3 (156-192)||(51234587-51234623)
[»] chr8 (32 HSPs)
chr8 (156-316)||(39434514-39434674)
chr8 (160-315)||(42659073-42659230)
chr8 (156-296)||(38815159-38815301)
chr8 (158-300)||(22589438-22589582)
chr8 (156-276)||(37514106-37514228)
chr8 (156-253)||(3187878-3187976)
chr8 (156-300)||(18804474-18804619)
chr8 (214-300)||(18596759-18596845)
chr8 (232-303)||(44337198-44337268)
chr8 (104-157)||(8619886-8619939)
chr8 (156-237)||(3821148-3821231)
chr8 (169-292)||(25021927-25022052)
chr8 (192-269)||(8882236-8882313)
chr8 (209-269)||(24320229-24320289)
chr8 (209-300)||(8619683-8619774)
chr8 (212-295)||(24350880-24350963)
chr8 (192-258)||(6592479-6592545)
chr8 (104-162)||(39434734-39434792)
chr8 (268-316)||(25326159-25326207)
chr8 (209-300)||(500103-500194)
chr8 (205-248)||(8540531-8540574)
chr8 (156-300)||(24124889-24125035)
chr8 (104-162)||(500294-500352)
chr8 (199-269)||(4699763-4699833)
chr8 (192-258)||(6792172-6792238)
chr8 (209-247)||(9259447-9259485)
chr8 (178-273)||(24451010-24451105)
chr8 (104-162)||(35739968-35740026)
chr8 (232-301)||(15566139-15566208)
chr8 (104-157)||(42922109-42922162)
chr8 (98-162)||(6592642-6592706)
chr8 (192-268)||(6618178-6618254)
[»] chr6 (22 HSPs)
chr6 (156-314)||(17249405-17249565)
chr6 (156-309)||(33220811-33220966)
chr6 (156-303)||(357816-357965)
chr6 (209-315)||(7749327-7749433)
chr6 (156-270)||(32115609-32115725)
chr6 (156-258)||(34304399-34304503)
chr6 (171-295)||(3137362-3137488)
chr6 (209-265)||(28625827-28625883)
chr6 (209-300)||(34168782-34168872)
chr6 (169-249)||(959493-959575)
chr6 (149-248)||(13398275-13398376)
chr6 (169-295)||(28009100-28009228)
chr6 (249-300)||(45816-45867)
chr6 (248-315)||(32531042-32531109)
chr6 (104-162)||(24016404-24016462)
chr6 (227-288)||(749501-749562)
chr6 (156-246)||(4166022-4166114)
chr6 (156-246)||(4206696-4206788)
chr6 (213-254)||(34554435-34554476)
chr6 (104-148)||(3714998-3715042)
chr6 (97-157)||(28543447-28543507)
chr6 (156-269)||(29338179-29338294)
[»] chr1 (39 HSPs)
chr1 (156-314)||(34644413-34644573)
chr1 (196-314)||(5453942-5454060)
chr1 (156-309)||(48841182-48841337)
chr1 (156-268)||(2764372-2764486)
chr1 (156-316)||(47459528-47459689)
chr1 (156-300)||(22346756-22346902)
chr1 (156-300)||(24177611-24177757)
chr1 (200-300)||(28493477-28493577)
chr1 (213-300)||(868560-868647)
chr1 (209-300)||(1114023-1114114)
chr1 (156-268)||(2898595-2898709)
chr1 (156-300)||(21472864-21473010)
chr1 (156-276)||(28041227-28041349)
chr1 (209-300)||(30688418-30688509)
chr1 (214-300)||(19035340-19035426)
chr1 (149-300)||(31737416-31737568)
chr1 (102-155)||(4861969-4862022)
chr1 (192-276)||(4611074-4611158)
chr1 (156-269)||(20259897-20260012)
chr1 (221-300)||(7213104-7213183)
chr1 (156-298)||(4862089-4862234)
chr1 (226-287)||(31742485-31742546)
chr1 (114-162)||(21473070-21473118)
chr1 (209-248)||(45835341-45835380)
chr1 (115-157)||(36486958-36487000)
chr1 (214-295)||(35387809-35387890)
chr1 (209-264)||(7483781-7483836)
chr1 (213-280)||(21934258-21934325)
chr1 (104-162)||(19035514-19035572)
chr1 (104-162)||(22346962-22347020)
chr1 (104-162)||(34644633-34644691)
chr1 (104-162)||(50161399-50161457)
chr1 (97-162)||(2764546-2764611)
chr1 (204-269)||(17077966-17078031)
chr1 (104-157)||(37932200-37932252)
chr1 (159-300)||(6670208-6670351)
chr1 (106-162)||(29169777-29169833)
chr1 (203-247)||(45057585-45057629)
chr1 (102-162)||(45659628-45659688)
[»] chr5 (31 HSPs)
chr5 (156-314)||(35310295-35310455)
chr5 (156-309)||(430454-430609)
chr5 (156-303)||(13167010-13167159)
chr5 (156-303)||(33692155-33692301)
chr5 (156-309)||(25663132-25663287)
chr5 (174-316)||(27336540-27336684)
chr5 (156-269)||(2566195-2566310)
chr5 (232-309)||(2917539-2917616)
chr5 (156-300)||(42921559-42921704)
chr5 (169-296)||(23023460-23023589)
chr5 (169-303)||(32269910-32270045)
chr5 (105-162)||(35456023-35456080)
chr5 (156-254)||(22188755-22188855)
chr5 (156-257)||(37873738-37873841)
chr5 (115-162)||(8100619-8100666)
chr5 (104-163)||(27336759-27336818)
chr5 (214-276)||(11005763-11005825)
chr5 (194-288)||(15292165-15292259)
chr5 (104-162)||(37873620-37873678)
chr5 (181-257)||(14423591-14423667)
chr5 (209-269)||(15506770-15506830)
chr5 (98-162)||(43129601-43129665)
chr5 (207-270)||(8100445-8100507)
chr5 (200-316)||(18176759-18176877)
chr5 (102-148)||(433373-433419)
chr5 (199-249)||(34475953-34476003)
chr5 (209-246)||(12033346-12033383)
chr5 (217-286)||(23092694-23092763)
chr5 (213-266)||(23424030-23424083)
chr5 (114-162)||(8858983-8859031)
chr5 (126-162)||(43115461-43115497)
[»] chr2 (38 HSPs)
chr2 (156-315)||(28224846-28225007)
chr2 (156-300)||(17344499-17344645)
chr2 (170-307)||(27494165-27494304)
chr2 (156-300)||(4413166-4413312)
chr2 (156-300)||(13413212-13413358)
chr2 (156-276)||(9685515-9685637)
chr2 (156-300)||(41868008-41868153)
chr2 (156-254)||(27502269-27502369)
chr2 (216-300)||(3208406-3208490)
chr2 (209-300)||(2626002-2626093)
chr2 (320-388)||(27585526-27585594)
chr2 (156-247)||(16351944-16352037)
chr2 (226-300)||(41702133-41702207)
chr2 (243-300)||(10587144-10587201)
chr2 (215-300)||(42122678-42122763)
chr2 (220-300)||(30602350-30602430)
chr2 (209-300)||(18745109-18745200)
chr2 (319-388)||(2224047-2224116)
chr2 (247-316)||(38723985-38724054)
chr2 (209-269)||(15515302-15515362)
chr2 (156-229)||(44686348-44686423)
chr2 (199-286)||(11921349-11921436)
chr2 (104-162)||(4413048-4413106)
chr2 (158-276)||(19161885-19162005)
chr2 (97-162)||(41867883-41867948)
chr2 (232-288)||(20143123-20143179)
chr2 (25-56)||(2224176-2224207)
chr2 (205-248)||(3825639-3825682)
chr2 (114-157)||(13147089-13147132)
chr2 (104-163)||(16351823-16351882)
chr2 (156-276)||(32029186-32029308)
chr2 (104-162)||(5532486-5532544)
chr2 (156-259)||(7760945-7761050)
chr2 (158-276)||(23485038-23485159)
chr2 (258-295)||(19514202-19514239)
chr2 (199-256)||(26407839-26407896)
chr2 (16-56)||(27585425-27585465)
chr2 (220-316)||(34250153-34250249)
[»] scaffold0009 (1 HSPs)
scaffold0009 (156-300)||(102967-103113)
[»] scaffold0309 (1 HSPs)
scaffold0309 (208-300)||(5185-5277)
[»] scaffold0406 (1 HSPs)
scaffold0406 (205-295)||(6754-6844)
[»] scaffold0198 (2 HSPs)
scaffold0198 (320-388)||(18421-18489)
scaffold0198 (16-56)||(18550-18590)
[»] scaffold0148 (1 HSPs)
scaffold0148 (156-300)||(33111-33257)
[»] scaffold0031 (1 HSPs)
scaffold0031 (159-269)||(49307-49419)
[»] scaffold0361 (1 HSPs)
scaffold0361 (169-245)||(17392-17468)
[»] scaffold0490 (1 HSPs)
scaffold0490 (104-162)||(6401-6459)
[»] scaffold0110 (2 HSPs)
scaffold0110 (209-300)||(47675-47766)
scaffold0110 (104-154)||(47521-47571)
[»] scaffold0186 (1 HSPs)
scaffold0186 (95-157)||(10436-10498)
[»] scaffold0244 (1 HSPs)
scaffold0244 (209-257)||(16809-16857)
[»] scaffold0514 (1 HSPs)
scaffold0514 (192-258)||(4385-4451)
[»] scaffold1768 (1 HSPs)
scaffold1768 (212-301)||(342-431)
[»] scaffold0470 (1 HSPs)
scaffold0470 (192-268)||(7496-7572)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 279 - 439
Target Start/End: Complemental strand, 1249620 - 1249460
Alignment:
Q  279 ctcctattcatgtgtaagtaatattaatagttaatattttatggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtg 378  Q
    |||||||| || ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  1249620 ctcctatttatatgtaagtaatattgatagtaaatattttatggttaacaactatggaatatatgtgattcatgatttattcgtaaagtatttaatcgtg 1249521  T
Q  379 atatatagcagttctgaaataataattgctattggttatggactgatcaagcagtttcatt 439  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  1249520 atatatagcagttctgaaataataaatgctattggttatggactgatcaagaagtttcatt 1249460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 1249811 - 1249618
Alignment:
Q  11 gtttaaactaagtctgttgcacgagggacaaaataaaagtgaatatttacattgaaagttacacggaaggttgagacttttac-------taagcagtct 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||       ||  ||| |     
T  1249811 gtttaaactaagtctgttgcacgagggacaaaataaaagtgaatatttacatagaatgttacatggaaggttgagacttttacggtaggatagacagccc 1249712  T
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacatagagtccaaagggttatgcataacaatgttgtctc 197  Q
    |||||  || ||||| |||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  1249711 taaaacctgcgtcaaataaagtggtcaaacatgagaaagcgtgttttgataatccacatagagtccaaagggttatgcataacaatgttgtctc 1249618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 166 - 302
Target Start/End: Original strand, 45003007 - 45003145
Alignment:
Q  166 gtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagc 263  Q
    |||||||| |||||||||| |||||||  ||||| ||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45003007 gtccaaagagttatgcatagcaatgttatgtctcataggaccatgaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgcagc 45003106  T
Q  264 ttgttgtccgcttacctcctattcatgtgtaagtaatat 302  Q
    || |||||||||| |||||||||||||||||||||||||    
T  45003107 ttattgtccgcttgcctcctattcatgtgtaagtaatat 45003145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 156 - 314
Target Start/End: Original strand, 28517387 - 28517547
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || || ||| |||||||||||||||| ||||| |||||||||||||||| |||||    
T  28517387 tctacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaagtcta 28517486  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaata 314  Q
    ||| |  ||||||||| |||  | |||||||||||||||||||||||||| ||||| ||||    
T  28517487 gcgacacagcttgttgcccgtctgcctcctattcatgtgtaagtaatattgatagtaaata 28517547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 156 - 299
Target Start/End: Original strand, 40726580 - 40726725
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||||||||||||||||||||||| |  ||||| ||| | ||| ||||||||||||| || |||||||||||||||||||||| |||||    
T  40726580 tctacatagagtccaaagggttatgcataacaatgctatgtctcctagatccatgaatgttgtgtttatgaggattgattttgccatccaaaaatgtcta 40726679  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaa 299  Q
     |  || ||||||||| |||||| ||||||||||||||||||||||    
T  40726680 acatcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaa 40726725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 5825280 - 5825120
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||| ||||||||||||||| |||||||  ||||| |||||  ||  ||||||||||||||| ||||| |||||||||| ||||||||||     
T  5825280 tctacatagagtcgaaagggttatgcatagcaatgttatgtctcctaggtctatggatgttgtgtttacgaggattggttttgccatcgaaaaaggtctt 5825181  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaata 314  Q
     ||||| ||||||||  | |||| ||||||||||||||||||| |||||| ||||||||||    
T  5825180 acggcgcagcttgttacctgcttgcctcctattcatgtgtaagaaatattgatagttaata 5825120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 300
Target Start/End: Original strand, 21326940 - 21327084
Alignment:
Q  158 tacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagc 255  Q
    |||||||||| |||| ||| ||||||| |||||||  ||||| ||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||| |    
T  21326940 tacatagagttcaaaaggtcatgcatagcaatgttatgtctcctaggtccatgaatgttgtgttcacgaggattgattttgccatccaaaaaggtctaac 21327039  T
Q  256 ggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||| ||||||||||| |||| ||| ||||||| |||||| ||||    
T  21327040 ggcgcagcttgttgtctgcttgccttctattcaagtgtaaataat 21327084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 45613942 - 45614076
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgttg--tctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| | | ||||||||||||||    |||| ||||| ||| |||||||||||||||| ||||| ||||||||||| ||||||||||    
T  45613942 tctacatagagttcaaaagttcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccgaaaaggtcta 45614041  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattca 288  Q
    |||||| |||||||||||||||| ||| |||||||    
T  45614042 gcggcgcagcttgttgtccgcttgccttctattca 45614076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 38766258 - 38766176
Alignment:
Q  227 attgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagt 309  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  38766258 attggttttgccatccaaaaaggtctagctgcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatagt 38766176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 38832225 - 38832154
Alignment:
Q  238 catccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagt 309  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||| |||||    
T  38832225 catccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatatgtaagtaatattgatagt 38832154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 48539188 - 48539094
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaag 248  Q
    ||||||||||||||||| ||| ||||||| ||||||  |||||| ||||| ||| |||||||||||||||| ||||| |||||||||||||||||    
T  48539188 tctacatagagtccaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 48539094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 19277300 - 19277164
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttac--gaagattgattttgccatccaaaaaggtc 251  Q
    |||||||||||| |||| ||| ||||||| ||||||  |||||| ||||| ||| ||||||||||| ||  ||| |||| ||||||||||||||||||||    
T  19277300 tctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacacgaaaattggttttgccatccaaaaaggtc 19277201  T
Q  252 tagcggcgtagcttgttgtccgcttacctcctattca 288  Q
    |||||||| ||||| ||| |||| | ||| |||||||    
T  19277200 tagcggcgcagcttattgcccgcctgccttctattca 19277164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 192 - 300
Target Start/End: Original strand, 45974737 - 45974845
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgt 291  Q
    |||||| ||||| ||| |||||||||||||| | |||  |||||| ||||||||||||||||| |||| ||||||||||||||||  || ||||||| ||    
T  45974737 tgtctcctaggttcatgaatgttgtgtttacaaggataaattttgtcatccaaaaaggtctagtggcgcagcttgttgtccgcttgtcttctattcaagt 45974836  T
Q  292 gtaagtaat 300  Q
    |||| ||||    
T  45974837 gtaaataat 45974845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 25187031 - 25187177
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||| ||||||| |||| ||| ||||||| ||||||  |||||| ||| | ||| |||||||||||  | | |||||||||| ||||| |||||| ||||    
T  25187031 tctatatagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatgaatgttgtgttcccaatgattgattttaccatctaaaaagatcta 25187130  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| ||||||||| |||||| ||| ||||||| |||||| ||||    
T  25187131 gcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataat 25187177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 36931887 - 36931963
Alignment:
Q  238 catccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatat 315  Q
    ||||||||||| |||||||||| |||||||| ||||||| |||||||||||| ||||||||||||| ||||| |||||    
T  36931887 catccaaaaag-tctagcggcgcagcttgttatccgcttgcctcctattcatatgtaagtaatattgatagtaaatat 36931963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 23037559 - 23037457
Alignment:
Q  149 ttgacaatctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaa 246  Q
    ||||| |||||| ||| || |||||||||||||||| ||||||  | ||||||||||  || ||| |||||||||||| |||||||||||||||| ||||    
T  23037559 ttgaccatctacgtagggttcaaagggttatgcatagcaatgtcatttctcttaggtctatgaattttgtgtttacgaggattgattttgccatctaaaa 23037460  T
Q  247 agg 249  Q
    |||    
T  23037459 agg 23037457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 27521478 - 27521385
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaa 247  Q
    |||||||||||| |||| ||| ||||||||||||||  |||||| || ||  || |||||||||||||||| |||||||||||||||| |||||    
T  27521478 tctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgtttacgaggattgattttgccatcgaaaaa 27521385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 269
Target Start/End: Complemental strand, 982956 - 982841
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||| ||||||  |||||  || || ||| ||||||||||| |||| ||||| | ||||||||||||||||||||    
T  982956 tctacatagagttcaaaaggtcatgcatatcaatgtcatgtcttctatgtccatgaatgttgtgttcacgaggattggtattgccatccaaaaaggtcta 982857  T
Q  254 gcggcgtagcttgttg 269  Q
    ||| |  |||||||||    
T  982856 gcgacacagcttgttg 982841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 27027768 - 27027844
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgtt 268  Q
    |||||| ||||| ||| ||||||||||| |||| ||||| |||||| |||||||||| |||||||| ||||||||||    
T  27027768 tgtctcctaggtccatgaatgttgtgttcacgaggattggttttgctatccaaaaagatctagcggtgtagcttgtt 27027844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 30216038 - 30216098
Alignment:
Q  102 cttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||||| || |||||| |||||||||||| |||||||||||||||||||||||| ||||    
T  30216038 cttaaaagctgcgtcaagcaaaatggtcaaatatgagaaagcgtgttttgacaatcaacat 30216098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 4501266 - 4501120
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| | | ||||||| ||||||  |||||| ||| | ||| |||||||||||||||| ||||   |||| |||| |||||||||||    
T  4501266 tctacatagagttcaaaagttcatgcatagcaatgtcatgtctcctagattcatgaatgttgtgtttacgaggattagctttgtcatctaaaaaggtcta 4501167  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    || ||| | ||| |||||||||| |||  |||||| |||||| ||||    
T  4501166 gcagcgcatcttattgtccgcttgccttatattcaagtgtaaataat 4501120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 24527596 - 24527482
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||| ||||||  | |||| | ||| ||| |||||||| || |||| ||||| ||||| ||||||||||| ||||    
T  24527596 tctacatagagttcaaaaggtcatgcatagcaatgtcatttctccttggtccatgaatgttgtattcacgaggattggttttgtcatccaaaaagatcta 24527497  T
Q  254 gcggcgtagcttgtt 268  Q
    |||||| ||||||||    
T  24527496 gcggcgcagcttgtt 24527482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 43856881 - 43856788
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaa 247  Q
    |||||||||||| |||||||| ||||| ||||||||  || ||| ||||| ||| |||||| |||||||||  ||||||||||| |||||||||    
T  43856881 tctacatagagttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacgagaattgattttgctatccaaaaa 43856788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 25186918 - 25186962
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgtt 148  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  25186918 taaaagttgtgtcaagtaaagtggtctaacatgagaaagcgtgtt 25186962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 2904332 - 2904242
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||||||||||||||  |||| |||||| |||||||||||| ||| |||||||||||||||| |  |  || |||||||||||||| ||||    
T  2904332 aatgttgtgtttacgataattggttttgctatccaaaaaggt-tagtggcgtagcttgttgtctgtatgtcttctattcatgtgtaattaat 2904242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 10905125 - 10904979
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| ||||| |  ||||||||||||||  |||||| ||||| ||| ||||| |||||||| | ||||||| |  ||||||||||||  |||    
T  10905125 tctacatagagttcaaagagccatgcataacaatgtcatgtctcctaggtccatgaatgtcgtgtttacaaggattgatctgaccatccaaaaagaccta 10905026  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |  ||| ||||||||  || ||| | | |||||||||||||| ||||    
T  10905025 gtagcgcagcttgttaccctcttgcattctattcatgtgtaaataat 10904979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 32584552 - 32584485
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgctt 276  Q
    |||||||||||||| |||||||||||| ||||||||||||| ||||| ||| | ||||| | ||||||    
T  32584552 aatgttgtgtttacaaagattgattttaccatccaaaaaggcctagcagcgcaacttgtcgcccgctt 32584485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 38839311 - 38839234
Alignment:
Q  178 atgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||  ||| | | |||| ||| |||||||||||||||||||||| |||| ||||||||||| |||||    
T  38839311 atgcataacaatgtcatgtttatcaggtccatgaatgttgtgtttacgaagattggttttaccatccaaaaatgtcta 38839234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 41117870 - 41117975
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||  ||| | | ||||||| ||||||  ||| || ||||| ||| ||||||||||| |||| |||||||||||| ||||||||| ||| |    
T  41117870 tctacatagagtttaaaagatcatgcatagcaatgtcatgtttcctaggtccatgaatgttgtgttcacgatgattgattttgctatccaaaaaagtcca 41117969  T
Q  254 gcggcg 259  Q
    ||||||    
T  41117970 gcggcg 41117975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 2520918 - 2520967
Alignment:
Q  251 ctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||||||| |||||||||||||||| ||| |||||||||||||| ||||    
T  2520918 ctagcggcgcagcttgttgtccgcttgccttctattcatgtgtaattaat 2520967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 5715022 - 5714954
Alignment:
Q  181 cataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaa 247  Q
    ||||||||||||  ||||| ||||| ||||||||||||||||| |||||||| ||||| |||| |||||    
T  5715022 cataacaatgttatgtctcctaggtccataaatgttgtgtttatgaagattggttttgtcatctaaaaa 5714954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 32336359 - 32336318
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggt 250  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  32336359 aatgttgtgttcacaaagattgattttgccatccaaaaaggt 32336318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 22197993 - 22197899
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaagg 249  Q
    |||||||||||| |||| ||||||| ||| ||| ||  |||||| |||||  || ||||||||||||||||  |||||||||| ||||||||||||    
T  22197993 tctacatagagttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgtgtttacgataattgattttgtcatccaaaaagg 22197899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 22239828 - 22239922
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaagg 249  Q
    |||||||||||| |||| ||||||| ||| ||| ||  |||||| |||||  || ||||||||||||||||  |||||||||| ||||||||||||    
T  22239828 tctacatagagttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgtgtttacgataattgattttgtcatccaaaaagg 22239922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 41071756 - 41071800
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||    
T  41071756 aatgttatgtttacgaagattgattttgtcatccaaaaagatcta 41071800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 34856813 - 34856750
Alignment:
Q  213 ttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgctt 276  Q
    ||||||||||  |||||||||||| |||| ||||||||||||||||| | ||| || |||||||    
T  34856813 ttgtgtttactgagattgattttgtcatctaaaaaggtctagcggcgcaacttattatccgctt 34856750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 24566960 - 24567002
Alignment:
Q  115 tcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatc 157  Q
    ||||||||| |||||||||||||||||| |||||| |||||||    
T  24566960 tcaagtaaagtggtcaaacatgagaaagggtgtttagacaatc 24567002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 28517269 - 28517327
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||| || |||||| ||| ||| ||||||||||||||||||||| ||||||| ||||    
T  28517269 taaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgtttagacaatcaacat 28517327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 9281277 - 9281382
Alignment:
Q  195 ctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgta 294  Q
    |||||| || ||| ||||||||||||| ||  |||| |||||| |||||||||||  || ||| | || |||||||| ||||||||  ||||||| ||||    
T  9281277 ctcttaagtccattaatgttgtgtttaggagaattggttttgcaatccaaaaaggcttaacggtgcagtttgttgtctgcttaccttatattcatatgta 9281376  T
Q  295 agtaat 300  Q
    | ||||    
T  9281377 attaat 9281382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 9292248 - 9292353
Alignment:
Q  195 ctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgta 294  Q
    |||||| || ||| ||||||||||||| ||  |||| |||||| |||||||||||  || ||| | || |||||||| ||||||||  ||||||| ||||    
T  9292248 ctcttaagtccattaatgttgtgtttaggagaattggttttgcaatccaaaaaggcttaacggtgcagtttgttgtctgcttaccttatattcatatgta 9292347  T
Q  295 agtaat 300  Q
    | ||||    
T  9292348 attaat 9292353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 19277425 - 19277360
Alignment:
Q  97 gcagtcttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||| |||||| || |||||| ||| | | |||||||||||||||||||| |||||||| ||||    
T  19277425 gcagtcctaaaagctgcgtcaagcaaagtagccaaacatgagaaagcgtgttctgacaatcaacat 19277360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 2904496 - 2904432
Alignment:
Q  98 cagtcttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||| ||||||||  |||||| ||||| ||||||||||||||||| ||||  ||||||| ||||    
T  2904496 cagtcctaaaagttacgtcaagcaaaatagtcaaacatgagaaagcatgttccgacaatcaacat 2904432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 21326830 - 21326878
Alignment:
Q  114 gtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||| ||| ||| |||||||||||||||||||| |||||||| ||||    
T  21326830 gtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacat 21326878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 27521598 - 27521538
Alignment:
Q  102 cttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||||| || ||  ||| ||||||||||||||||| |||||| |||||||| ||||    
T  27521598 cttaaaagttgcgttaaacaaagtggtcaaacatgagaaaacgtgttctgacaatcaacat 27521538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 156 - 315
Target Start/End: Original strand, 50001026 - 50001187
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||| |||||||||||||||||||| |||||||  ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50001026 tctacatatagtccaaagggttatgcatagcaatgttatgtctcctagatccataaatgttgtgtttacgaagattgattttgccatccaaaaagatcta 50001125  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatat 315  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  50001126 gcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattaatagtaaatat 50001187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 156 - 316
Target Start/End: Complemental strand, 53619593 - 53619431
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||| |||||||||||||||||||||||  ||||||||||| ||| ||||||||||||||||  |||| ||||||||||||||||||||||    
T  53619593 tctacatagagtctaaagggttatgcataacaatgttatgtctcttaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtcta 53619494  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatatt 316  Q
    |||||| ||||||||| |  |||||||||||||||||||||||||||||| ||||| ||||||    
T  53619493 gcggcgcagcttgttgcctacttacctcctattcatgtgtaagtaatattgatagtaaatatt 53619431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 156 - 318
Target Start/End: Complemental strand, 23255720 - 23255556
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || || ||| ||| |||||||||||| |||||||||||||||||| ||| |||||    
T  23255720 tctacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatattgtgtttacgaggattgattttgccatccagaaaagtcta 23255621  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatatttt 318  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||    
T  23255620 gcggcgcagcttgttgtccgcttacctcctattcatatgtgagtaatattgatagtaaatatttt 23255556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 156 - 315
Target Start/End: Complemental strand, 3330003 - 3329842
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||||||||||||||||| |||||||  ||||| ||||| ||| |||| ||||||||||| ||||| ||||||||||||||||||||||    
T  3330003 tctacatagagtccaaagggttatgcatagcaatgttatgtctcctaggtccatgaatgctgtgtttacgatgattggttttgccatccaaaaaggtcta 3329904  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatat 315  Q
    |||||| ||||||||| |||||| ||||||||||| |||||||||||||| ||||| |||||    
T  3329903 gcggcgcagcttgttgcccgcttgcctcctattcacgtgtaagtaatattgatagtaaatat 3329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 156 - 298
Target Start/End: Complemental strand, 39001404 - 39001260
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgttgtctct--taggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||||||| ||||||||||||||||||| |||  ||||| ||| |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  39001404 tctacatagagtccaaaggattatgcataacaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgtcatccaaaaaggtcta 39001305  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagta 298  Q
    |||||| || |||||| |||||| |||||||||||||||||||||    
T  39001304 gcggcgcagtttgttgcccgcttgcctcctattcatgtgtaagta 39001260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 4419270 - 4419120
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| ||||||||||||||||||||||||  ||||| ||||| ||| |||||||||||||||| ||||| ||||||||||||||||  ||||    
T  4419270 tctacatagagttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattggttttgccatccaaaaaa-tcta 4419172  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaa 305  Q
    |||||| ||||||||| |||||| ||||||||||||||| ||||||||||||    
T  4419171 gcggcgcagcttgttgcccgcttgcctcctattcatgtgcaagtaatattaa 4419120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 156 - 303
Target Start/End: Original strand, 55933560 - 55933709
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||||||||||||||| ||||||||| ||  ||||| ||||| | | |||||||||||||||| |||||||||||||||||||||| |||||    
T  55933560 tctacatagagtccaaagggttatacataacaatattatgtctcctaggtccgtgaatgttgtgtttacgatgattgattttgccatccaaaaaagtcta 55933659  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatatt 303  Q
    ||| || || ||||||||||||| ||||||||||||||| ||||||||||    
T  55933660 gcgacgcagtttgttgtccgcttgcctcctattcatgtgcaagtaatatt 55933709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 309
Target Start/End: Original strand, 48657015 - 48657168
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||||| | ||||||||| |||||||  ||||| |||||  || |||||||||||||||| ||||||||||||| ||||||||| ||||    
T  48657015 tctacatagagtccaaatgattatgcatagcaatgttatgtctcataggtctatgaatgttgtgtttacgatgattgattttgccgtccaaaaagatcta 48657114  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagt 309  Q
    | |  || |||||||| | ||||  ||||||||||||| ||||||||||| |||||    
T  48657115 gtg--gtggcttgttgcctgcttggctcctattcatgtataagtaatattgatagt 48657168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 600792 - 600938
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||| ||||| ||||  |||||| ||||| ||| |||| ||||||||||| ||||  |||||||||||||||| || ||    
T  600792 tctacatagagttcaaaaggtcatgtataactatgtcatgtctcctaggtccattaatgctgtgtttacgatgattagttttgccatccaaaaatgtata 600891  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||| ||||||||||||||||||| ||| ||||||| |||||| ||||    
T  600892 gcgacgtagcttgttgtccgcttgccttctattcaagtgtaaataat 600938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 30940832 - 30940978
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||||||||||  | | || |||||  || ||||||||||| | || ||||||||||||||||||||||||||||    
T  30940832 tctacatagagttcaaaaggtcatgcataacaatgtcatatatcctaggtctatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtcta 30940931  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||| || ||||||||| |||||| ||| ||||||| |||||| ||||    
T  30940932 gcgacgcagcttgttgcccgcttgccttctattcaagtgtaaataat 30940978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 302
Target Start/End: Complemental strand, 31847071 - 31846962
Alignment:
Q  193 gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtg 292  Q
    ||||| ||||| ||| |||||||||||  ||| ||||  || ||||||||||||||||||||||||| || |||||| |||||| |||||||||||||||    
T  31847071 gtctcctaggtccatgaatgttgtgttagcgaggattcgttatgccatccaaaaaggtctagcggcgcaggttgttgcccgcttgcctcctattcatgtg 31846972  T
Q  293 taagtaatat 302  Q
    ||||||||||    
T  31846971 taagtaatat 31846962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 8738199 - 8738071
Alignment:
Q  169 caaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttg 266  Q
    |||||| | |||||||| |||||  |||||||||||| ||| |||||||||| ||| ||||||||||||| |||||||||| || |||||||| || |||    
T  8738199 caaaggctcatgcataaaaatgtcatgtctcttaggttcatgaatgttgtgtatacaaagattgattttgtcatccaaaaaagtttagcggcgcagtttg 8738100  T
Q  267 ttgtccgcttacctcctattcatgtgtaa 295  Q
    || |||||||||||   ||||||||||||    
T  8738099 ttatccgcttacctttcattcatgtgtaa 8738071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 156 - 286
Target Start/End: Original strand, 50464396 - 50464528
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||| ||||||  ||||||| ||||||||||||||  ||||||  |  || || |||||||||||||||| |||| ||||||||||||||||||  |||    
T  50464396 tctacgtagagtttaaagggtcatgcataacaatgtcatgtctcccaaatatatgaatgttgtgtttacgaggatttattttgccatccaaaaagaccta 50464495  T
Q  254 gcggcgtagcttgttgtccgcttacctcctatt 286  Q
    |||||| |||||||||||||||| ||| |||||    
T  50464496 gcggcgcagcttgttgtccgcttgccttctatt 50464528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 26521440 - 26521350
Alignment:
Q  210 atgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| |||||||  ||||| |||||||||| ||| |||| ||||||||||||||    
T  26521440 atgttgtgtttacgaggattggttttgtcatccaaaaaggtttagcggcacagctttttgtccgcttgccttctatccatgtgtaagtaat 26521350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 40392726 - 40392800
Alignment:
Q  226 gattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |||||| ||||    
T  40392726 gattggttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaaataat 40392800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 16955467 - 16955321
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||| ||||||  |||||| ||||  ||| |||||||||||||||| ||||||||| |||||| |||||| ||      
T  16955467 tctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggcccatgaatgttgtgtttacgaggattgatttggccatcaaaaaagatccg 16955368  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
     || || || ||||||||||||| ||| ||| ||| |||||| ||||    
T  16955367 acgacgcagtttgttgtccgcttgccttctactcaagtgtaaataat 16955321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 23242893 - 23242803
Alignment:
Q  170 aaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggc 258  Q
    ||||||| ||||||||||||||  | |||||||||| ||||||| |||||||||||| |||||||||||  |||||||||| |||| ||||    
T  23242893 aaagggtcatgcataacaatgtcatttctcttaggtccataaatattgtgtttacgatgattgattttgttatccaaaaagctctaacggc 23242803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 301
Target Start/End: Original strand, 47585160 - 47585255
Alignment:
Q  206 ataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaata 301  Q
    |||||| |||||||||||||||||| ||||| |||| |||||||| ||||||||||| |||||||| | || ||| |||||||  ||||| |||||    
T  47585160 ataaattttgtgtttacgaagattggttttgtcatctaaaaaggtttagcggcgtagtttgttgtctgtttgccttctattcaaatgtaaataata 47585255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 12053415 - 12053329
Alignment:
Q  213 ttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaa 299  Q
    ||||||||||||  |||| |||||||||| ||||||| | |||| || ||||||||||| |||| ||| ||||||||||||||||||    
T  12053415 ttgtgtttacgagaattggttttgccatcgaaaaaggccgagcgacgcagcttgttgtctgcttgccttctattcatgtgtaagtaa 12053329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 23605025 - 23604951
Alignment:
Q  226 gattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||||||||| |||||||||||||||||||||| | ||||||||||| ||  || |||||||||||||| ||||    
T  23605025 gattgattttgtcatccaaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatgtgtaaataat 23604951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 30940721 - 30940779
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||| |||||||||| |||||||||||||||||||||||| |||||||| ||||    
T  30940721 taaaagttgcgtcaagtaaagtggtcaaacatgagaaagcgtgttctgacaatcaacat 30940779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 315
Target Start/End: Original strand, 46440989 - 46441150
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||||||||||||| |||||| ||||| |  ||||| ||||| ||| ||  || | ||||||| ||||||||||| |||| |||||| | ||    
T  46440989 tctacatagagtccaaagggttgtgcatagcaatgctatgtctcataggttcatgaaaattatatttacgatgattgattttgtcatctaaaaagattta 46441088  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatat 315  Q
    ||  |||| ||||| | ||||||  ||| ||||||| ||||||||||| | ||||| |||||    
T  46441089 gcatcgtaacttgtcgcccgcttgtctcttattcatttgtaagtaatactgatagtaaatat 46441150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 12917984 - 12917895
Alignment:
Q  226 gattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatat 315  Q
    ||||||||||| |||||||||||||||| ||||  | ||| ||||| |||| |||| |||||||| |||||||||||| ||||| |||||    
T  12917984 gattgattttgtcatccaaaaaggtctaacggcacaacttattgtctgcttgcctcttattcatgagtaagtaatattgatagtaaatat 12917895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 41372253 - 41372322
Alignment:
Q  239 atccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatag 308  Q
    ||||| ||||||||||| ||| | ||||||||| |||| |||||||||||||||||||||||||| ||||    
T  41372253 atccacaaaggtctagcagcgcaacttgttgtctgcttgcctcctattcatgtgtaagtaatattgatag 41372322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 300
Target Start/End: Complemental strand, 132399 - 132246
Alignment:
Q  149 ttgacaatctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaa 246  Q
    |||||| |||||| |||||  ||||||| | ||||||||||||  ||||| |||||| ||| | |||||||||||| |  || ||||||  |||| ||||    
T  132399 ttgacattctacacagagtttaaagggtcaagcataacaatgtcatgtcttttaggttcatgattgttgtgtttacaagaatcgattttatcatctaaaa 132300  T
Q  247 aggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||| || ||| | ||||||||  |||||| ||| ||||||||| |||||||||    
T  132299 aggtataacggtgcagcttgttccccgcttgccttctattcatgcgtaagtaat 132246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 302
Target Start/End: Original strand, 34107796 - 34107944
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| ||||  || |||||||||||||||  ||||| ||| | ||| ||||||||||| |||| ||||| ||||| |||||||||| || ||    
T  34107796 tctacatagagttcaaaaagtcatgcataacaatgttatgtctcctagatccatgaatgttgtgttcacgaggattggttttgtcatccaaaaaagttta 34107895  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatat 302  Q
     ||||  ||||||||| || |||   | ||||||| |||||| ||||||    
T  34107896 acggcacagcttgttgcccacttgttttctattcaagtgtaaataatat 34107944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 54190954 - 54191050
Alignment:
Q  159 acatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||| |||||||  ||||||||||||||  || |||||| || ||||||| |||| ||||| ||||||| |||||| |||||||||| ||||    
T  54190954 acatagagttcaaagggccatgcataacaatgtcatgactcttaagtccataaatattgtatttacaaagattggttttgctatccaaaaagttcta 54191050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 1041386 - 1041310
Alignment:
Q  200 aggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgctt 276  Q
    |||| ||| |||||||||||| ||| |||||||||| |||||||||||   ||| ||||||||||| ||||||||||    
T  1041386 aggttcatgaatgttgtgttttcgatgattgattttaccatccaaaaaaacctaacggcgtagcttattgtccgctt 1041310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 50442617 - 50442701
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgctt 276  Q
    |||||| ||||| |||  |||||||||||| || ||||| ||||||||||||||||||  ||| |||| ||||||||| ||||||    
T  50442617 tgtctcctaggttcatggatgttgtgtttaagaggattggttttgccatccaaaaagggttagtggcgcagcttgttgcccgctt 50442701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 52403948 - 52403868
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgttgtctcttaggtacataaatgttgtgtttacgaagattgattttg 236  Q
    |||||||| ||| |||||||| ||| | |||||| |  ||||||||||  ||||||||||||||||||||||||| |||||    
T  52403948 tctacatatagttcaaagggtcatgtacaacaatatcatctcttaggtttataaatgttgtgtttacgaagattggttttg 52403868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 50463102 - 50463165
Alignment:
Q  213 ttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgctt 276  Q
    |||||||||||| ||||  |||||||||||||||||  ||||||||| |||||| |||||||||    
T  50463102 ttgtgtttacgaggatttgttttgccatccaaaaagacctagcggcgcagcttgctgtccgctt 50463165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 50000907 - 50000965
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||| || |||||| ||| |||||||||||||||||||||||| |||||||| ||||    
T  50000907 taaaagctgcgtcaagcaaagtggtcaaacatgagaaagcgtgttctgacaatcaacat 50000965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 53170520 - 53170386
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctctta--ggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtc 251  Q
    |||||||||||| |||| ||| ||||||| ||||||  |||||| ||  ||| ||| ||||||||||| |||| |||||||||||| ||| |||||||||    
T  53170520 tctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctataggt-catgaatgttgtgttcacgaggattgattttgctatctaaaaaggtc 53170422  T
Q  252 tagcggcgtagcttgttgtccgcttacctcctattca 288  Q
    |||| | | ||| ||||||| |||| ||| |||||||    
T  53170421 tagcagtgcagc-tgttgtctgcttgccttctattca 53170386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 56462206 - 56462291
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgcca 239  Q
    |||||||||||| |||||| | |||||| |||||||  |||||| || || ||||||||||||||||||||  |||| ||||||||    
T  56462206 tctacatagagttcaaaggatcatgcatgacaatgtcatgtctcctaagtccataaatgttgtgtttacgagaattggttttgcca 56462291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 9601171 - 9601095
Alignment:
Q  199 taggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgctt 276  Q
    ||||| ||||| || ||||||||||| ||||||||||| ||||||||||| | || ||||| | ||||||||||||||    
T  9601171 taggttcataagtggtgtgtttacgaggattgattttgtcatccaaaaagct-taacggcgcaacttgttgtccgctt 9601095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 23255828 - 23255777
Alignment:
Q  105 aaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaat 156  Q
    |||||||| |||||| ||| ||| |||||||||||||||||||| |||||||    
T  23255828 aaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaat 23255777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 35181834 - 35181763
Alignment:
Q  319 atggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagcagt 390  Q
    |||||||| ||||| |  ||| |||| |||| |||||||||| | |||| ||||||||||||||||||||||    
T  35181834 atggttaaaaactaggagatatatgtaattcgtgatttattcttaaagtttttaatcgtgatatatagcagt 35181763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 3698685 - 3698733
Alignment:
Q  199 taggtacataaatgttgtgtttacgaagattgattttgccatccaaaaa 247  Q
    ||||| ||| || |||||||||| ||||||||||||||||||| |||||    
T  3698685 taggttcatgaacgttgtgtttatgaagattgattttgccatctaaaaa 3698733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 34213626 - 34213534
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt-tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaa 247  Q
    |||| ||||||| |||||||| |||| ||||||||| | |||| ||| | ||| |||||||||||||| | ||| | ||||||||||| ||||    
T  34213626 tctagatagagttcaaagggtcatgcctaacaatgtgtctctcctagttccatgaatgttgtgtttacaaggatcggttttgccatccgaaaa 34213534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 45760839 - 45760875
Alignment:
Q  127 gtcaaacatgagaaagcgtgttttgacaatctacata 163  Q
    |||||| |||||||||||||||||||||||| |||||    
T  45760839 gtcaaagatgagaaagcgtgttttgacaatcaacata 45760875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 49354225 - 49354265
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaagg 249  Q
    |||||||||||||||| ||||||||||| | ||||||||||    
T  49354225 aatgttgtgtttacgatgattgattttgtcgtccaaaaagg 49354265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 156 - 316
Target Start/End: Complemental strand, 26772765 - 26772603
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||| ||||||| |||||| |||||||||||||||||  ||||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  26772765 tctatatagagtacaaaggattatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtcta 26772666  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatatt 316  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||||||| ||| | ||||||    
T  26772665 gcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgataataaatatt 26772603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 156 - 315
Target Start/End: Original strand, 38670980 - 38671141
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||| |||| |||||||||| |||||||  ||||| ||||| ||| |||||||||| ||||| ||||| |||||||||| ||||| |||||    
T  38670980 tctacatagagtctaaagagttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtgtacgaggattggttttgccatctaaaaaagtcta 38671079  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatat 315  Q
    |||||| |||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||    
T  38671080 gcggcgcagcttgttgtccgcttacctcctatttatgtgtaaataatattgatagtaaatat 38671141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 160 - 300
Target Start/End: Original strand, 39583333 - 39583475
Alignment:
Q  160 catagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcgg 257  Q
    |||||||| |||||||| ||||||| ||||||  |||||| ||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  39583333 catagagttcaaagggtcatgcatagcaatgtcatgtctcctaggttcatgaatgtcgtgtttacgaggattgattttgccatccaaaaaggtctagcgg 39583432  T
Q  258 cgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    || | ||||||||| |||| | | |||||||||||||||||||    
T  39583433 cgcaacttgttgtctgcttgctttctattcatgtgtaagtaat 39583475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 53785716 - 53785570
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||| ||||||  |||||| ||||| ||| |||||| ||||||||| ||||| ||||||||||||| |||||| |    
T  53785716 tctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttatgtttacgaggattggttttgccatccaacaaggtcca 53785617  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||||||||||||| |||||| ||| ||||||| |||||| ||||    
T  53785616 gcggcgtagcttgttgcccgcttgccttctattcaagtgtaaataat 53785570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 32546802 - 32546656
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| ||||  || |||||||  |||||  |||||| ||||| ||| ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  32546802 tctacatagagttcaaaaagtcatgcatagtaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtcta 32546703  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| ||||||||| |||||| ||| ||||||| |||||| ||||    
T  32546702 gcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataat 32546656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 301
Target Start/End: Complemental strand, 44198774 - 44198627
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| || | ||||||||||| ||||||  |||||| ||||| ||| |||||||||||| |||  ||||||||||||||||||||||||  |    
T  44198774 tctacatagagttcagaaggttatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttgcgataattgattttgccatccaaaaaggttga 44198675  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaata 301  Q
    ||| |  |||||||||||||||| ||| ||||||| |||||| |||||    
T  44198674 gcgacacagcttgttgtccgcttgccttctattcaagtgtaaataata 44198627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 13582517 - 13582415
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||| ||||| |||| ||| ||||||||||||||  |||||| ||||  ||| |||||||||||||||||||||||||| |||||||||||||| |||    
T  13582517 tctacagagagttcaaaaggtcatgcataacaatgtcatgtctcctaggaccatgaatgttgtgtttacgaagattgatttagccatccaaaaaggccta 13582418  T
Q  254 gcg 256  Q
    |||    
T  13582417 gcg 13582415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 26276577 - 26276500
Alignment:
Q  199 taggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgctt 276  Q
    ||||| ||| ||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  26276577 taggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaagatctagcggtgtagcttgttgcccgctt 26276500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 14959246 - 14959178
Alignment:
Q  320 tggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagca 388  Q
    ||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  14959246 tggttaaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagca 14959178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 156 - 269
Target Start/End: Original strand, 26856862 - 26856977
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||||||| ||||||| ||||||  |||||| |||||  || ||||||||| || ||| ||||| |||| ||||||||||||| |||    
T  26856862 tctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgaggattggttttaccatccaaaaaggccta 26856961  T
Q  254 gcggcgtagcttgttg 269  Q
    |||||| |||||||||    
T  26856962 gcggcgcagcttgttg 26856977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 39491151 - 39491083
Alignment:
Q  320 tggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagca 388  Q
    ||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  39491151 tggttaaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagca 39491083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 52411991 - 52412086
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaagg 249  Q
    |||||||||||| |||||||| ||||||||||||||  |||||| |||   ||||||| |||||||||| | ||||||||||||||||||||||||    
T  52411991 tctacatagagttcaaagggtcatgcataacaatgtcatgtctcctagacccataaatattgtgtttacaatgattgattttgccatccaaaaagg 52412086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 46940873 - 46941019
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||||| | |||||  |||||||  || ||| ||||| ||| ||||||||||||||||| ||||||||||  ||||||||||  |||    
T  46940873 tctacatagagttcaaaggatcatgcacgacaatgtcatgactcataggttcatgaatgttgtgtttacgaaaattgattttgttatccaaaaagaccta 46940972  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||| | | ||||||| | | |||||| |||||||||||||| ||||    
T  46940973 gcggtgcaacttgttgcctgtttaccttctattcatgtgtaattaat 46941019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 218 - 303
Target Start/End: Complemental strand, 50657320 - 50657235
Alignment:
Q  218 tttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatatt 303  Q
    ||||||||||||| |||||| || ||||||| ||||||| ||||| |||||||| ||||  ||| |||||||||||||||||||||    
T  50657320 tttacgaagattggttttgctattcaaaaagatctagcgacgtagtttgttgtcagcttgtctcatattcatgtgtaagtaatatt 50657235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 44843 - 44694
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgt---gtttacgaagattgattttgccatccaaaaaggt 250  Q
    |||||||||||| |||| ||| ||||||| ||||||  ||| || ||||| ||| ||||||||   ||| || | ||||  |||||||||||||||||||    
T  44843 tctacatagagttcaaaaggtcatgcatagcaatgtcatgtttcctaggtccatgaatgttgttgtgttcacaaggatttgttttgccatccaaaaaggt 44744  T
Q  251 ctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||||||| || |||||| |||||| ||| ||||||| |||||| ||||    
T  44743 ctagcggcgcagtttgttgcccgcttgccttctattcaagtgtaaataat 44694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 38146063 - 38145969
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaag 248  Q
    ||||| |||||| |||||||| ||||||||||||||  |||||| ||||| ||| || ||||||||||||| ||||||||||| |||| ||||||    
T  38146063 tctacttagagttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgtttacgatgattgattttgtcatctaaaaag 38145969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 4669788 - 4669885
Alignment:
Q  181 cataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgctt 276  Q
    |||||||||||  |||||| | ||| ||| |||||||||||||||| |||||||||||  |||||||||||| | |||||| ||||||||| ||||||    
T  4669788 cataacaatgtcatgtctccttggtccatgaatgttgtgtttacgatgattgattttgttatccaaaaaggtttggcggcgcagcttgttgcccgctt 4669885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 38978899 - 38978994
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaagg 249  Q
    |||||||| ||| |||| ||| ||||||||||||||  |||||| |||||  || ||||||||||||||||| |||  ||||||||||||||||||    
T  38978899 tctacatatagttcaaaaggtgatgcataacaatgtcatgtctcataggtttatcaatgttgtgtttacgaaaattagttttgccatccaaaaagg 38978994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 49017919 - 49017827
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaata 301  Q
    ||||||||||||| || |||||||||||||||||||||||     |||| | |||||||||||||||| ||| ||||||| |||||| |||||    
T  49017919 aatgttgtgtttatgaggattgattttgccatccaaaaagtatcggcggtgcagcttgttgtccgcttgccttctattcaagtgtaaataata 49017827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 4763893 - 4764038
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||||||||||| ||||||  |||||| | ||| ||| |||||||||||||||| ||||    ||||||||||||||||  |     
T  4763893 tctacatagagttcaaaaggttatgcatagcaatgtcatgtctcct-ggtccatgaatgttgtgtttacgaggattagaattgccatccaaaaaggcttg 4763991  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    | |||| | ||||||| |||||| ||| ||||||| |||||| ||||    
T  4763992 gtggcgcaacttgttgcccgcttgccttctattcaagtgtaaataat 4764038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 272
Target Start/End: Original strand, 37133099 - 37133217
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| | || ||| ||||||| ||||||  |||||| || ||  || |||||||||||||  | ||||| |||||| |||||||||||||||    
T  37133099 tctacatagagttctaaaggtcatgcatagcaatgtcatgtctcctaagttaatgaatgttgtgtttataaggattggttttgcgatccaaaaaggtcta 37133198  T
Q  254 gcggcgtagcttgttgtcc 272  Q
    |||||| || |||||||||    
T  37133199 gcggcgcagtttgttgtcc 37133217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 52741612 - 52741758
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||| ||||||  |||||| ||| | |||  || |||| || |||||||||  ||||||||||||||||||||||    
T  52741612 tctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatttatcttgtattcacgaagatttgttttgccatccaaaaaggtcta 52741711  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||| || | ||| ||| |||||  ||| ||||||| |||||| ||||    
T  52741712 gcgacgcaacttattgcccgctcgccttctattcaagtgtaaataat 52741758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 8592076 - 8592002
Alignment:
Q  226 gattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||||||||||||||||||||| | ||||||| ||||||||  || ||| |||  ||||||||||||||||||    
T  8592076 gattgattttgccatccaaaaaggcccagcggcgcagcttgttacccacttgccttatattcatgtgtaagtaat 8592002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 5338657 - 5338552
Alignment:
Q  149 ttgacaatctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaa 246  Q
    |||||| |||||||||||| |||| ||| |||| || ||||||  |||||| |||||  |   ||||||||||||||| ||||| |||||||||||||||    
T  5338657 ttgacattctacatagagttcaaaaggtcatgcgtagcaatgtcttgtctcataggtcga---atgttgtgtttacgaggattggttttgccatccaaaa 5338561  T
Q  247 aggtctagc 255  Q
     ||||||||    
T  5338560 tggtctagc 5338552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 4473031 - 4472923
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgt 291  Q
    |||||| |||||  || ||| ||||||||||||  |||| ||||| |||||||||| |||||  |   ||||||||| |||||||  || ||||||||||    
T  4473031 tgtctcctaggtctatgaatattgtgtttacgagaattggttttgtcatccaaaaaagtctaatgatatagcttgttatccgcttgtcttctattcatgt 4472932  T
Q  292 gtaagtaat 300  Q
    |||||||||    
T  4472931 gtaagtaat 4472923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 53502592 - 53502636
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttg 236  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||    
T  53502592 tgtctcttaggtgcatgaatgttgtgtttacgaaaattgattttg 53502636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 3643145 - 3643014
Alignment:
Q  169 caaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttg 266  Q
    |||||| | ||||||||||||||  ||| | |||||| ||| ||||||||||||  || ||||||||||| ||||| |||||| ||| || || |||||     
T  3643145 caaaggatcatgcataacaatgtcatgttttttaggtccatgaatgttgtgttt--gatgattgattttgtcatccgaaaaggcctaacgacgcagctta 3643048  T
Q  267 ttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||| |||||| ||| |||||  ||||||| ||||    
T  3643047 ttgcccgcttgccttctattattgtgtaattaat 3643014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 7502002 - 7502037
Alignment:
Q  113 tgtcaagtaaaatggtcaaacatgagaaagcgtgtt 148  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7502002 tgtcaagtaaagtggtcaaacatgagaaagcgtgtt 7502037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 26856755 - 26856802
Alignment:
Q  115 tcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||||||||||||||| |||| |||||||||| |||||||| ||||    
T  26856755 tcaagtaaaatggtcaaatatgataaagcgtgttgtgacaatcaacat 26856802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 26772883 - 26772825
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||||||||||||| ||| ||| ||||||| ||||| |||||| |||||||| ||||    
T  26772883 taaaagttgtgtcaagcaaagtggccaaacatcagaaaacgtgttctgacaatcaacat 26772825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 39583211 - 39583269
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||| |||||||| ||||    
T  39583211 taaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacat 39583269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 44198892 - 44198834
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||| |||||| ||| ||| |||||||||||||||||||| ||| |||| ||||    
T  44198892 taaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgagaatcaacat 44198834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 2601778 - 2601689
Alignment:
Q  212 gttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaata 301  Q
    ||||||||||||| ||||||||||||||    |||| ||||| ||  | ||||||||||||| ||  || |||||||||||||| |||||    
T  2601778 gttgtgtttacgaggattgattttgccactgtaaaaagtctaacgatgcagcttgttgtccgtttgtcttctattcatgtgtaattaata 2601689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 38670872 - 38670920
Alignment:
Q  113 tgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||||| || ||||||||||||||||||||| |||||||| ||||    
T  38670872 tgtcaagtaaagtg-tcaaacatgagaaagcgtgttctgacaatcaacat 38670920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 26393841 - 26393889
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcgg 257  Q
    |||||||||||||||| ||||||| || |||||||| ||||| ||||||    
T  26393841 aatgttgtgtttacgaggattgatatttccatccaacaaggtttagcgg 26393889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 37132991 - 37133039
Alignment:
Q  114 gtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||| ||| |||| ||||||||||||||||||| |||||||| ||||    
T  37132991 gtcaagcaaagtggttaaacatgagaaagcgtgttctgacaatcaacat 37133039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 39491252 - 39491212
Alignment:
Q  16 aactaagtctgttgcacgagggacaaaataaaagtgaatat 56  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  39491252 aactaaggttgttgcaggagggacaaaataaaagtgaatat 39491212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 51234623 - 51234587
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt 192  Q
    |||||||||||| |||| |||||||||||||||||||    
T  51234623 tctacatagagttcaaaaggttatgcataacaatgtt 51234587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 156 - 316
Target Start/End: Complemental strand, 39434674 - 39434514
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  39434674 tctacatagagtccaaagggttatgcatatcaatgtaatgtctcttagatccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtcta 39434575  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatatt 316  Q
    |||||| |||||||||   ||   |||||||||||||||||||||||||| ||||| ||||||    
T  39434574 gcggcgcagcttgttgctagc--gcctcctattcatgtgtaagtaatattgatagtaaatatt 39434514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 160 - 315
Target Start/End: Complemental strand, 42659230 - 42659073
Alignment:
Q  160 catagagtccaaagggttatgcataacaatgttgtctctt--aggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcgg 257  Q
    ||||||||| ||||||||||||||| |||| || | ||||  |||| ||| |||||||||||||||| |||| |||||| |||||||||||||||| |||    
T  42659230 catagagtctaaagggttatgcatagcaatattatgtcttctaggttcatgaatgttgtgtttacgaggattaattttgtcatccaaaaaggtctaacgg 42659131  T
Q  258 cgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatat 315  Q
      || |||||||||||||| |||||||||| ||||||||||||||| ||||| |||||    
T  42659130 tataacttgttgtccgcttgcctcctattcttgtgtaagtaatattgatagtaaatat 42659073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 156 - 296
Target Start/End: Complemental strand, 38815301 - 38815159
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||||||| ||||||| ||||||  |||||| ||||| ||| |||||||||||||||| ||||| |||| |||||||||||||  ||    
T  38815301 tctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggtttttccatccaaaaaggctta 38815202  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaag 296  Q
    |||||| ||||||||| |||||| ||| |||||||||||||||    
T  38815201 gcggcgcagcttgttgcccgcttgccttctattcatgtgtaag 38815159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 158 - 300
Target Start/End: Original strand, 22589438 - 22589582
Alignment:
Q  158 tacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagc 255  Q
    |||||||||| |||| ||| ||||||| ||||||  |||||| |||||  || ||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  22589438 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcataggtctatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagc 22589537  T
Q  256 ggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||| ||||||||| |||||| |||  |||||| |||||| ||||    
T  22589538 ggcgcagcttgttgcccgcttgccttttattcaagtgtaaataat 22589582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 37514228 - 37514106
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||| |||||||  ||||||||||| ||| |||||||| || |||| ||||||| |||||| |||||||||||||    
T  37514228 tctacatagagttcaaaaggtcatgcatatcaatgttacgtctcttaggtccatgaatgttgtattcacgaggattgatcttgccacccaaaaaggtcta 37514129  T
Q  254 gcggcgtagcttgttgtccgctt 276  Q
     ||||| ||||||||| ||||||    
T  37514128 acggcgcagcttgttgcccgctt 37514106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 3187976 - 3187878
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||| ||||||||||||||| |||||||  ||||| ||||| ||| ||||||||||||||||  |||| ||||||||||||||||||||||    
T  3187976 tctacatagagtc-aaagggttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtcta 3187878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 18804619 - 18804474
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||| | |||| ||| ||||||||||||||  || ||| ||||| || |  |||| ||||||||| ||||| ||||||||||||||||||||||    
T  18804619 tctacatagatttcaaaaggtcatgcataacaatgtcatgactcctaggttcagag-tgttttgtttacgaggattggttttgccatccaaaaaggtcta 18804521  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| ||||||||| | |||| ||| ||||||| |||||| ||||    
T  18804520 gcggcgcagcttgttgcctgcttgccttctattcaagtgtaaataat 18804474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 18596759 - 18596845
Alignment:
Q  214 tgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| |||| ||||| ||||||||||| |||||||||||||||| ||||||||||| |||| ||| ||||||| |||||| ||||    
T  18596759 tgtgttcacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtcagcttgccttctattcaagtgtaaataat 18596845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 44337268 - 44337198
Alignment:
Q  232 ttttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatatt 303  Q
    |||||||||||||||||||| ||||||  |||||||||  ||||| ||||||||||||||||||||||||||    
T  44337268 ttttgccatccaaaaaggtccagcggcc-agcttgttgctcgcttgcctcctattcatgtgtaagtaatatt 44337198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 8619939 - 8619886
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatc 157  Q
    ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||    
T  8619939 taaaagttgcgtcaagtaaaatggtcaaacatgaaaaagcgtattttgacaatc 8619886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 3821231 - 3821148
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgc 237  Q
    |||||||||||| |||||||| ||||||| ||||||  |||||| ||||| |||||||||| ||||||||| ||||||| ||||    
T  3821231 tctacatagagttcaaagggtaatgcatagcaatgtcatgtctcctaggttcataaatgttatgtttacgaggattgatattgc 3821148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 292
Target Start/End: Original strand, 25021927 - 25022052
Alignment:
Q  169 caaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttg 266  Q
    |||||||| ||||| ||||||||  | |||| ||||| ||  |||||||||||||| | ||||||||||  ||||||||||  ||||||| |||||||||    
T  25021927 caaagggtcatgcacaacaatgtcatatctcctaggtccaggaatgttgtgtttacaatgattgattttatcatccaaaaaattctagcgacgtagcttg 25022026  T
Q  267 ttgtccgcttacctcctattcatgtg 292  Q
    ||||  | || ||| |||||||||||    
T  25022027 ttgtttgtttgccttctattcatgtg 25022052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 8882313 - 8882236
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttg 269  Q
    |||||| ||||| ||| |||||||||||||||| |||| ||||||||||| ||||| || || ||||| |||||||||    
T  8882313 tgtctcctaggtccatgaatgttgtgtttacgaggattaattttgccatcaaaaaatgtttaacggcgcagcttgttg 8882236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 24320289 - 24320229
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttg 269  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||| | | |||||||||    
T  24320289 aatgttgtgtttacgaggattgattttgatatccaaaaaggtctagcagtgcagcttgttg 24320229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 8619774 - 8619683
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||||||||||||| ||||||||||||| | |||||||| ||| |   | ||||| ||||||||||| ||  ||||||||||||| ||||    
T  8619774 aatgttgtgtttacgacgattgattttgcctttcaaaaaggcctaacaatgcagcttattgtccgcttaacttttattcatgtgtaattaat 8619683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 24350880 - 24350963
Alignment:
Q  212 gttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaa 295  Q
    ||||||||||||| ||||| ||||||| |||||||| | |||| |||  ||| ||||| ||||||| || ||||||||||||||    
T  24350880 gttgtgtttacgaggattggttttgccctccaaaaaagcctagtggcccagcctgttgcccgcttatcttctattcatgtgtaa 24350963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 6592545 - 6592479
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggc 258  Q
    |||||| ||||| ||| ||||||||||||||||  |||| ||||| |||||| ||||||||||||||    
T  6592545 tgtctcataggttcatgaatgttgtgtttacgagtattggttttgtcatccagaaaggtctagcggc 6592479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 39434792 - 39434734
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||| |||||| ||| ||| |||||||||||||||||||| |||||||| ||||    
T  39434792 taaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacat 39434734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 25326207 - 25326159
Alignment:
Q  268 tgtccgcttacctcctattcatgtgtaagtaatattaatagttaatatt 316  Q
    |||||||||| ||||||| ||||||||||||||||| ||||| ||||||    
T  25326207 tgtccgcttatctcctatccatgtgtaagtaatattgatagtaaatatt 25326159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 500194 - 500103
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||||||||||||| |||||||||| |||| ||||||||  |  ||||  ||||| ||| |||||| ||| ||||||| |||||| ||||    
T  500194 aatgttgtgtttacgaggattgattttaccattcaaaaaggcttgacggcacagcttattgcccgcttgccttctattcaagtgtaaataat 500103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 8540531 - 8540574
Alignment:
Q  205 cataaatgttgtgtttacgaagattgattttgccatccaaaaag 248  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  8540531 cataaatgttgtgtttacgatgattgattttatcatccaaaaag 8540574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 24125035 - 24124889
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||| ||| |||| ||| ||||||| ||||||  |||||| ||||| ||| |||||||||||||| | ||||  |||||||||||  ||| |  |     
T  24125035 tctacataaagttcaaaaggtcatgcatagcaatgtcatgtctcataggtccatgaatgttgtgtttacaaggattagttttgccatccgtaaaagcttg 24124936  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| ||||| ||  |||||| ||| ||||||| |||||| ||||    
T  24124935 gcggcgcagcttttttgccgcttgccttctattcaagtgtaaataat 24124889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 500352 - 500294
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||| |||||| ||| ||| ||||||||||||| |||||| |||||||| ||||    
T  500352 taaaagttgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacat 500294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 4699833 - 4699763
Alignment:
Q  199 taggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttg 269  Q
    ||||| ||| |||||||||||||| | ||||  ||||||||||||||||||  ||| |||| |||||||||    
T  4699833 taggtccatgaatgttgtgtttacaaggattagttttgccatccaaaaaggcttagtggcgcagcttgttg 4699763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 6792238 - 6792172
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggc 258  Q
    |||||| || || ||||||||||||||||||||| |||| ||||| |||| | |||| |||||||||    
T  6792238 tgtctcataagtccataaatgttgtgtttacgaatattggttttgtcatcaagaaagatctagcggc 6792172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 9259447 - 9259485
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaa 247  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  9259447 aatgttgtatttacgaagattgattttgtcatccaaaaa 9259485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 24451105 - 24451010
Alignment:
Q  178 atgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccg 273  Q
    ||||||| ||||||  |||||| ||||| ||| ||||||||||| |||| ||||| ||||||||||| ||||  |||||||||| ||||| |||||||    
T  24451105 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgatgattg-ttttgccatcc-aaaatatctagcggcgcagcttattgtccg 24451010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 35739968 - 35740026
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||||||||| ||| ||| ||| |||||||||||||||| ||| |||||||| ||||    
T  35739968 taaaagttgtgttaagcaaagtggccaaacatgagaaagcgggttctgacaatcaacat 35740026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 15566208 - 15566139
Alignment:
Q  232 ttttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaata 301  Q
    |||||||||||||||| |||||||||| ||| |||||| |||||| | | |||||||  ||||| |||||    
T  15566208 ttttgccatccaaaaaagtctagcggcatagtttgttgcccgcttgcattctattcaaatgtaaataata 15566139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 42922109 - 42922162
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatc 157  Q
    ||||||||| |||||  ||||||||||||  ||||||| |||||||||||||||    
T  42922109 taaaagttgcgtcaaacaaaatggtcaaatttgagaaaacgtgttttgacaatc 42922162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 6592706 - 6592642
Alignment:
Q  98 cagtcttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||| |||||| || |||||| ||| ||| |||||||||||||||||||| | |||||| ||||    
T  6592706 cagtcgtaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctcacaatcaacat 6592642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 6618254 - 6618178
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgtt 268  Q
    |||||| ||||| ||| |||||| |||||||||  |||| ||||| ||||||||||| |||| ||||  ||||||||    
T  6618254 tgtctcataggtccatgaatgttatgtttacgagtattggttttgtcatccaaaaagatctaacggcacagcttgtt 6618178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 156 - 314
Target Start/End: Original strand, 17249405 - 17249565
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||||||| ||||| ||| |||||||  ||||| || || ||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  17249405 tctacatagagtccaaaggattatgtatagcaatgttatgtctcctaagttcatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtcta 17249504  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaata 314  Q
    |||||| ||||||||| |||||| |||||||||||||| ||||||||||| ||||| ||||    
T  17249505 gcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaatattgatagtaaata 17249565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 156 - 309
Target Start/End: Original strand, 33220811 - 33220966
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgttgtctctt--aggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||  |||| ||| ||||||| ||||||||  |||| ||||||||||| ||||||||||    
T  33220811 tctacatatagtccaaagggttatgcatagcaatgttgtgtcttctaggtccatgaatgttgcgtttacgataattggttttgccatcctaaaaggtcta 33220910  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagt 309  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  33220911 gcggcgcagcttgttggccgcttgcctcctattcatgtgtaagtaatattgatagt 33220966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 156 - 303
Target Start/End: Original strand, 357816 - 357965
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgttgtctct--taggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||||| | ||| ||||| ||||||| |||||  ||||| ||| ||||||||||||||||||||| ||||||||||| ||||| || ||    
T  357816 tctacatagagtccaaatgattaagcatagcaatgttatctctcctaggtccatgaatgttgtgtttacgaagattaattttgccatctaaaaatgtata 357915  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatatt 303  Q
    ||||| |||||||||||| | ||  ||||||||||| |||||||||||||    
T  357916 gcggcatagcttgttgtcggtttgtctcctattcatatgtaagtaatatt 357965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 315
Target Start/End: Complemental strand, 7749433 - 7749327
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatag 308  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||||||| | ||||||||| |||||| |||||||||||||||||| ||||||| ||||    
T  7749433 aatgttgtgtttacgaggattggttttgccatcctaaaaggtctagcggtgcagcttgttgcccgcttgcctcctattcatgtgtaactaatattgatag 7749334  T
Q  309 ttaatat 315  Q
    | |||||    
T  7749333 taaatat 7749327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 32115725 - 32115609
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||| ||||| |||| ||| ||||||||||||||  |||||| ||||| ||| |||||||||||||||| |||||||||||| ||| |||||||||||    
T  32115725 tctacaaagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgctatctaaaaaggtcta 32115626  T
Q  254 gcggcgtagcttgttgt 270  Q
    |||| | | ||||||||    
T  32115625 gcggtggaacttgttgt 32115609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 34304503 - 34304399
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||||||||| |||||||||| |||| |  |||||| |||||  || |||||||| ||||||| |||||||||||| |||||||||||| ||    
T  34304503 tctacatagagtccaaagagttatgcatagcaatatcatgtctcataggtctatgaatgttgtatttacgaggattgattttgcaatccaaaaaggtata 34304404  T
Q  254 gcggc 258  Q
    |||||    
T  34304403 gcggc 34304399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 3137362 - 3137488
Alignment:
Q  171 aagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgtt 268  Q
    |||||| ||||||| ||||||  |||||| ||||| ||| |||||||||||||||| ||||| ||||||||||||||||||  |||| | | | ||||||    
T  3137362 aagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 3137461  T
Q  269 gtccgcttacctcctattcatgtgtaa 295  Q
    | ||| || ||| | ||||||||||||    
T  3137462 gcccgtttgccttccattcatgtgtaa 3137488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 28625883 - 28625827
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagctt 265  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||||||||| |||||    
T  28625883 aatgttgtgtttacggagattgattttgccattcaaaaagatctagcggcgcagctt 28625827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 34168872 - 34168782
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||||||||| |||| ||||| |||||| ||||||||||| ||||||||| | ||||| | |||||| ||| |||||||||||||| ||||    
T  34168872 aatgttgtgtt-acgaggattggttttgctatccaaaaaggcctagcggcgcaacttgtcgcccgcttgccttctattcatgtgtaattaat 34168782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 959575 - 959493
Alignment:
Q  169 caaagggttatgcataacaatgttgtctct--taggtacataaatgttgtgtttacgaagattgattttgccatccaaaaagg 249  Q
    |||| ||| ||||||| ||||||||| |||  ||||| ||| |||||||||||||||| ||||||||||| |||| |||||||    
T  959575 caaaaggtcatgcatagcaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattgattttgtcatctaaaaagg 959493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 13398275 - 13398376
Alignment:
Q  149 ttgacaatctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaa 246  Q
    |||||| |||||||||||| |||| | | ||||||||||||||   | ||  ||| | |||||||||||||||||||| | ||||||||| |||||||||    
T  13398275 ttgacattctacatagagttcaaaagatgatgcataacaatgtcacgacttctagatgcataaatgttgtgtttacgatggttgattttgtcatccaaaa 13398374  T
Q  247 ag 248  Q
    ||    
T  13398375 ag 13398376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 28009100 - 28009228
Alignment:
Q  169 caaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttg 266  Q
    |||||||| || || ||||||||  || ||| ||||| ||| || ||||| ||||| |  ||||||||||| ||||||||||| ||| || || |||||     
T  28009100 caaagggtcatacacaacaatgtcatgactcctaggtccatgaacgttgtctttaccagaattgattttgcaatccaaaaaggcctaacgacgcagctta 28009199  T
Q  267 ttgtccgcttacctcctattcatgtgtaa 295  Q
    ||||||| || ||| ||||||||||||||    
T  28009200 ttgtccgtttgccttctattcatgtgtaa 28009228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 45816 - 45867
Alignment:
Q  249 gtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||||||||| ||||||||| |||||| ||||||||||| |||||| ||||    
T  45816 gtctagcggcgcagcttgttgcccgcttgcctcctattcaagtgtaaataat 45867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 315
Target Start/End: Original strand, 32531042 - 32531109
Alignment:
Q  248 ggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatat 315  Q
    |||||||||| | ||||||||||| || |  ||| ||||||||||||||||||||| ||||| |||||    
T  32531042 ggtctagcggtgcagcttgttgtctgcgtgtctcatattcatgtgtaagtaatattgatagtaaatat 32531109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 24016462 - 24016404
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||||||  ||||||||||| ||||||||||||||||| |||| | |||||| ||||    
T  24016462 taaaagttgcatcaagtaaaatagtcaaacatgagaaagcttgttctcacaatcaacat 24016404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 749501 - 749562
Alignment:
Q  227 attgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattca 288  Q
    ||||||||||||||||||||| ||||  || |  |||||||||||||||| ||| |||||||    
T  749501 attgattttgccatccaaaaacgtctgacgacacagcttgttgtccgcttgccttctattca 749562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 4166022 - 4166114
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaa 246  Q
    ||||||||||||  ||| ||| |||||| |||||||  |||| | |||||  |||||| | |||||||||| ||||| |||||||||||||||    
T  4166022 tctacatagagtttaaaaggtcatgcatgacaatgtcatgtcacctaggtcaataaatatagtgtttacgaggattggttttgccatccaaaa 4166114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 4206696 - 4206788
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaa 246  Q
    |||||||||||| |||| ||| |||||| |||||||  |||| | |||||  || ||| | |||||||||| ||||| |||||||||||||||    
T  4206696 tctacatagagttcaaaaggtcatgcatgacaatgtcatgtcacctaggtcaatgaatatagtgtttacgaggattggttttgccatccaaaa 4206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 34554435 - 34554476
Alignment:
Q  213 ttgtgtttacgaagattgattttgccatccaaaaaggtctag 254  Q
    |||||||||||| ||||||||||| |||||||||||| ||||    
T  34554435 ttgtgtttacgaggattgattttgtcatccaaaaaggcctag 34554476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 3715042 - 3714998
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgtt 148  Q
    |||||||||||||||  |||||||| |||||||||||| ||||||    
T  3715042 taaaagttgtgtcaaacaaaatggttaaacatgagaaaacgtgtt 3714998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 28543507 - 28543447
Alignment:
Q  97 gcagtcttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatc 157  Q
    |||| ||||||||| | |||||| ||| ||| ||||||||||||| |||||||||| ||||    
T  28543507 gcagccttaaaagtcgcgtcaagcaaagtggccaaacatgagaaatcgtgttttgaaaatc 28543447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 269
Target Start/End: Original strand, 29338179 - 29338294
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||  || |||||||| ||||| | ||||||  || ||| ||||| ||| |||||||||||||| | |||||||||| | |||||||| || |||    
T  29338179 tctacatatggttcaaagggtcatgcacatcaatgtcatgactcctaggtccatgaatgttgtgtttacaaggattgatttttctatccaaaatggccta 29338278  T
Q  254 gcggcgtagcttgttg 269  Q
    || | | |||||||||    
T  29338279 gcagtgcagcttgttg 29338294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 34644573 - 34644413
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||||||||||||||||| |||||||  ||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||| |||||    
T  34644573 tctacatagagtccaaagggttatgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgccatccaaaaaagtcta 34644474  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaata 314  Q
    |||||| || |||||| |||||||||||||||| |||| ||  ||||||| ||||| ||||    
T  34644473 gcggcgcagtttgttgcccgcttacctcctatttatgtatatataatattgatagtaaata 34644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 5454060 - 5453942
Alignment:
Q  196 tcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaa 295  Q
    |||||||| ||| |||||||||||||| | ||||| ||||| |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  5454060 tcttaggtccatgaatgttgtgtttacaaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaa 5453961  T
Q  296 gtaatattaatagttaata 314  Q
    |||||||| ||||| ||||    
T  5453960 gtaatattgatagtaaata 5453942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 156 - 309
Target Start/End: Original strand, 48841182 - 48841337
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||| |||| ||||||||||| ||||||  ||||| ||  |  || ||| || ||||||||| |||||||||||| ||||||||| |||||    
T  48841182 tctacatagagtctaaagagttatgcataataatgttatgtctcctaaatctatgaatattatgtttacgaggattgattttgcaatccaaaaaagtcta 48841281  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagt 309  Q
    || ||| | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  48841282 gcagcgcaacttgttgtccgcttacctcatattcatgtgtaagtaatattaatagt 48841337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 2764486 - 2764372
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||| |||||||||||||||||| | |||||||  ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||| ||    
T  2764486 tctacataaagtccaaagggttatgcaaatcaatgttatgtctcttaggtccataaatgttgtgtttacgatgattgattttaccatccaaaaaggttta 2764387  T
Q  254 gcggcgtagcttgtt 268  Q
    |||||| ||||||||    
T  2764386 gcggcgcagcttgtt 2764372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 156 - 316
Target Start/End: Complemental strand, 47459689 - 47459528
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||||||||||  |||||||| |||||||  ||||| || ||  |||||||||||||||||||  |||||||| ||||| ||||||||||||    
T  47459689 tctacatagagtccaaaggaatatgcatagcaatgttatgtctcctaagtctataaatgttgtgtttacgagaattgatttagccattcaaaaaggtcta 47459590  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatatt 316  Q
    || ||| ||||||||||| ||||  |||||||||||||||||| |||||| || || ||||||    
T  47459589 gc-gcgcagcttgttgtctgcttggctcctattcatgtgtaaggaatattgatcgtaaatatt 47459528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 22346902 - 22346756
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||| ||||| |||| ||| |||||||  |||||  |||||| |||||  || ||||||||||| |||| ||||  ||||||||||||||||||||||    
T  22346902 tctacacagagttcaaaaggtcatgcatagaaatgtcatgtctcctaggtttatgaatgttgtgttcacgaggattagttttgccatccaaaaaggtcta 22346803  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| |||||||||||||||| ||| ||||||| |||||| ||||    
T  22346802 gcggcgcagcttgttgtccgcttgccttctattcaagtgtaaataat 22346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 24177611 - 24177757
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| ||||  || ||||||| ||||||  | |||| ||||| ||| ||||||||||| |||| ||||| |||||||| |||||||||||||    
T  24177611 tctacatagagttcaaaaagtcatgcatagcaatgtcatatctcctaggtccatgaatgttgtgttcacgaggattggttttgccaaccaaaaaggtcta 24177710  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||| | ||||||||| ||||||  || ||||||| |||||| ||||    
T  24177711 gcggtgcagcttgttgcccgcttgtcttctattcaagtgtaaataat 24177757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 28493477 - 28493577
Alignment:
Q  200 aggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaa 299  Q
    |||| ||| |||||| |||| |||| |||||||||||||||||||||||||||||||||| || |||||||||| ||  || ||||||| |||||| |||    
T  28493477 aggtccatgaatgttatgttcacgaggattgattttgccatccaaaaaggtctagcggcgcagtttgttgtccgtttgtcttctattcaagtgtaaataa 28493576  T
Q  300 t 300  Q
    |    
T  28493577 t 28493577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 868560 - 868647
Alignment:
Q  213 ttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||||| || | ||||| |||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||| |||||| ||||    
T  868560 ttgtgttcacaaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataat 868647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 1114023 - 1114114
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| ||||  ||||||||| ||||||  || ||||||| |||||| ||||    
T  1114023 aatgttgtgtttacgaggattggttttgccatccaaaaaggtctaacggcacagcttgttgcccgcttggcttctattcaagtgtaaataat 1114114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 2898709 - 2898595
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| | | |||||||||||| |  |||||| || |  ||| ||||||||||||| || ||||||||||||||||||||||||  ||    
T  2898709 tctacatagagttcaaaagatcatgcataacaatatcatgtctcatacgatcatgaatgttgtgtttaagaggattgattttgccatccaaaaaggctta 2898610  T
Q  254 gcggcgtagcttgtt 268  Q
    |||||||||||||||    
T  2898609 gcggcgtagcttgtt 2898595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 21473010 - 21472864
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||| ||||||  |||||| ||||| ||| ||||||| ||| | || || || ||||||||||||||||||||||    
T  21473010 tctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgcgttcaggaggactggttttgccatccaaaaaggtcta 21472911  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| | ||| ||| |||||| | | ||||||| |||||| ||||    
T  21472910 gcggcgcaacttattgcccgcttgcattctattcaagtgtaaataat 21472864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 28041227 - 28041349
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||| ||||||  ||||   || || ||| ||||||||| | | || |||||||||| |||||||||||||||||    
T  28041227 tctacatagagttcaaaaggtcatgcatagcaatgtcatgtcctctaagtccatgaatgttgtgctcatgaggattgatttttccatccaaaaaggtcta 28041326  T
Q  254 gcggcgtagcttgttgtccgctt 276  Q
    |||||| ||||||||||||||||    
T  28041327 gcggcggagcttgttgtccgctt 28041349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 30688509 - 30688418
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||||||||||||| ||||| |||||  ||||||||||| ||||||||| ||||||||| |||||| ||  |||||||||||||| ||||    
T  30688509 aatgttgtgtttacgaggattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgccatctattcatgtgtaattaat 30688418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 19035426 - 19035340
Alignment:
Q  214 tgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| |||| ||||| ||||| |||||||||||||||||||||| ||||||||||||| || ||| ||||||| |||||| ||||    
T  19035426 tgtgttcacgaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgtccgattgccttctattcaagtgtaaataat 19035340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 300
Target Start/End: Original strand, 31737416 - 31737568
Alignment:
Q  149 ttgacaatctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaa 246  Q
    |||||| |||||||||||| |||| ||| ||||||| |||||||  || || ||| | ||| ||| | |||||||||| |||||||||||||||||||||    
T  31737416 ttgacattctacatagagttcaaaaggtcatgcatatcaatgttatgtttcctagatccatgaat-tagtgtttacgaggattgattttgccatccaaaa 31737514  T
Q  247 aggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||  | |||||| ||||||||||| | || ||| ||||||| |||||| ||||    
T  31737515 aggcttggcggcgcagcttgttgtctgtttgccttctattcaagtgtaaataat 31737568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 4861969 - 4862022
Alignment:
Q  102 cttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaa 155  Q
    ||||||||||| |||||||||||||||||||||||||||||||| || ||||||    
T  4861969 cttaaaagttgcgtcaagtaaaatggtcaaacatgagaaagcgtcttctgacaa 4862022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 4611158 - 4611074
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgctt 276  Q
    |||||| ||||| ||| ||| ||||||| |||| ||||||||||| |||||||||||||||| | ||  ||||||||||||||||    
T  4611158 tgtctcctaggtccatgaatattgtgttcacgatgattgattttgtcatccaaaaaggtctaacagcacagcttgttgtccgctt 4611074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 269
Target Start/End: Original strand, 20259897 - 20260012
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| |||||||  |||||  |||||| || ||  ||||||||||||||||    ||||| ||||||||||||||||||||||    
T  20259897 tctacatagagttcaaaaggtcatgcatagtaatgtcatgtctcataagttaataaatgttgtgtttatatggattggttttgccatccaaaaaggtcta 20259996  T
Q  254 gcggcgtagcttgttg 269  Q
    |||||| || ||||||    
T  20259997 gcggcgcagtttgttg 20260012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 7213183 - 7213104
Alignment:
Q  221 acgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||| ||||| |||| ||||||||||||||||||||||| | ||||||| |||||| ||| ||||||| |||||| ||||    
T  7213183 acgatgattggttttaccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaaataat 7213104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 298
Target Start/End: Original strand, 4862089 - 4862234
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattga-ttttgccatccaaaaaggtct 252  Q
    |||||||||||| |||||||| ||||||||||||||   ||| ||||| | ||| ||||||||| |||||| |||||| |||||||||  |  |||| ||    
T  4862089 tctacatagagttcaaagggtcatgcataacaatgtcacgtcccttagatccatgaatgttgtgattacgaggattgatttttgccatatatgaaggcct 4862188  T
Q  253 agcggcgtagcttgttgtccgcttacctcctattcatgtgtaagta 298  Q
    ||||||| ||||||||| ||  || | |  ||||||||||||||||    
T  4862189 agcggcgcagcttgttgcccagttgctttgtattcatgtgtaagta 4862234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 31742485 - 31742546
Alignment:
Q  226 gattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattc 287  Q
    |||||||||||||||| ||||||||| |||| |||| |||||||||| ||||||| ||||||    
T  31742485 gattgattttgccatctaaaaaggtccagcgacgtaacttgttgtcctcttaccttctattc 31742546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 21473118 - 21473070
Alignment:
Q  114 gtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  21473118 gtcaagtaaaatggccaaacatgagaaagcgtgttctgacaatcaacat 21473070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 45835341 - 45835380
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaag 248  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  45835341 aatgttgtgtttacgaggattgattttgccatccaaaaag 45835380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 36487000 - 36486958
Alignment:
Q  115 tcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatc 157  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  36487000 tcaagtaaagtggtcaaatatgagaaagcgtgttttgacaatc 36486958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 35387809 - 35387890
Alignment:
Q  214 tgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaa 295  Q
    ||||||||| | ||||| ||||| ||| |||||| || || |||||||||||||||||| |||  || ||||||||||||||    
T  35387809 tgtgtttacaatgattggttttgtcattcaaaaaagtttaacggcgtagcttgttgtccacttgtcttctattcatgtgtaa 35387890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 7483836 - 7483781
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagct 264  Q
    |||||||||||||||||||||  |||||||||| |||||||  |||||||| ||||    
T  7483836 aatgttgtgtttacgaagattagttttgccatctaaaaaggcttagcggcgcagct 7483781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 21934325 - 21934258
Alignment:
Q  213 ttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacct 280  Q
    |||| |||| || ||||| ||||||||||||||||||  |||||||| ||||||||| | ||||||||    
T  21934325 ttgtatttaagaggattggttttgccatccaaaaagggttagcggcgcagcttgttgcctgcttacct 21934258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 19035572 - 19035514
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||| |||||||| ||||    
T  19035572 taaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacat 19035514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 22347020 - 22346962
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||||| ||||||| ||| ||| |||| ||||||||||||||| |||||||| ||||    
T  22347020 taaaagttatgtcaagcaaagtggccaaatatgagaaagcgtgttctgacaatcaacat 22346962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 34644691 - 34644633
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||| |||||  ||| ||| |||||||||||||||||||| |||||| ||||||    
T  34644691 taaaagttgcgtcaaacaaagtggccaaacatgagaaagcgtgttctgacaacctacat 34644633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 50161399 - 50161457
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||| |||||| ||| ||| |||||||||||||||||||| | |||||| ||||    
T  50161399 taaaagttgcgtcaagcaaagtggacaaacatgagaaagcgtgttctcacaatcaacat 50161457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 2764611 - 2764546
Alignment:
Q  97 gcagtcttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||| ||||||||||||||   ||| ||||||||||||||||| ||||||  ||||||| ||||    
T  2764611 gcagtcctaaaagttgtgtcagacaaagtggtcaaacatgagaaaacgtgttccgacaatcaacat 2764546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 17077966 - 17078031
Alignment:
Q  204 acataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttg 269  Q
    |||||||||||||||| | || ||||| |||||||||| ||||| ||||| ||||| || ||||||    
T  17077966 acataaatgttgtgttcatgatgattggttttgccatctaaaaaagtctaacggcgcagattgttg 17078031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 37932200 - 37932252
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatc 157  Q
    |||||||||||||||| |||||||||||| | ||||||| ||||| ||||||||    
T  37932200 taaaagttgtgtcaagcaaaatggtcaaatacgagaaag-gtgttctgacaatc 37932252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 300
Target Start/End: Original strand, 6670208 - 6670351
Alignment:
Q  159 acatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcg 256  Q
    ||||||||| ||||| || |||||| |||||||  | |||| ||| | ||| |||||| | |||||||  ||| |||||||||||||||||  | |||      
T  6670208 acatagagttcaaagagtcatgcattacaatgtcatatctcctagattcatgaatgttatatttacgataattaattttgccatccaaaaaaatatagta 6670307  T
Q  257 gcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||| | |||||||||| ||| ||| ||||| || ||||||||||    
T  6670308 gcgcaccttgttgtccacttgccttctatttatatgtaagtaat 6670351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 29169777 - 29169833
Alignment:
Q  106 aaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||||||||||||||  ||| |||||| |||||| |||||| |||||||| ||||    
T  29169777 aaagttgtgtcaagtaaggtggccaaacacgagaaaacgtgttctgacaatcaacat 29169833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 45057629 - 45057585
Alignment:
Q  203 tacataaatgttgtgtttacgaagattgattttgccatccaaaaa 247  Q
    |||||||||||||||||||  | ||||||||||| ||||||||||    
T  45057629 tacataaatgttgtgtttataatgattgattttgtcatccaaaaa 45057585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 45659628 - 45659688
Alignment:
Q  102 cttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||||| || |||||||||  ||| |||||| ||||||||||||| |||||||| ||||    
T  45659628 cttaaaagctgcgtcaagtaaggtggccaaacacgagaaagcgtgttctgacaatcaacat 45659688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 35310455 - 35310295
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||||||||||||| |||||| |||||||  ||||| ||||| ||| ||||||||||||||||  |||| |||||||||||||| |||| ||    
T  35310455 tctacatagagtccaaagggttttgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaagaggttta 35310356  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaata 314  Q
     || || ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  35310355 acgacgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatagttaata 35310295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 309
Target Start/End: Complemental strand, 430609 - 430454
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||| ||||||||||||||||||  ||||||  ||||| ||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  430609 tctacatagattccaaagggttatgcatagtaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattatgccatccaaaaaggtcta 430510  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagt 309  Q
     ||| | ||||||| ||| |||| ||||||||||||||| |||||||||| |||||    
T  430509 tcggtgcagcttgtngtctgcttgcctcctattcatgtgcaagtaatattgatagt 430454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 156 - 303
Target Start/End: Original strand, 13167010 - 13167159
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||||||||||||||||| ||||| |  ||||| ||||| ||| ||||||| |||||||| |||||||| ||  |||||||||| ||||    
T  13167010 tctacatagagtccaaagggttatgcatagcaatggtatgtctcctaggtccatgaatgttgggtttacgatgattgattctgttatccaaaaagatcta 13167109  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatatt 303  Q
    |||||| ||||||||| || ||| |||||||||||||||||| |||||||    
T  13167110 gcggcgcagcttgttgcccacttgcctcctattcatgtgtaattaatatt 13167159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 156 - 303
Target Start/End: Original strand, 33692155 - 33692301
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||| ||||||||||| |||||||||||||||  ||||| ||||| ||| |||||| |||||||||   ||| |||| |||||||||||| ||||    
T  33692155 tctacatagtgtccaaagggt-atgcataacaatgttatgtctcataggttcatgaatgttctgtttacgat--ttggtttttccatccaaaaagatcta 33692251  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatatt 303  Q
    |||||| ||||||||| | |||| ||||||||||||||||||||||||||    
T  33692252 gcggcgcagcttgttgcctgcttgcctcctattcatgtgtaagtaatatt 33692301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 309
Target Start/End: Original strand, 25663132 - 25663287
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||||||||||||||||| |||||||  ||| | ||||| ||| ||||||| |||||||| |||||  |||| ||||||||||||||||    
T  25663132 tctacatagagtccaaagggttatgcatatcaatgttatgtcccctaggtccatgaatgttgagtttacgaggattggctttgtcatccaaaaaggtcta 25663231  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagt 309  Q
     || || |||||||||  || || |||||| || |||||||||||||||| |||||    
T  25663232 acgacgcagcttgttgctcgtttgcctcctttttatgtgtaagtaatattgatagt 25663287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 316
Target Start/End: Complemental strand, 27336684 - 27336540
Alignment:
Q  174 ggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtc 271  Q
    ||||||| ||| |||||||  ||||| || || ||| |||||||| ||||| | |||||||||||||||| ||||||||||||||| | || || |||||    
T  27336684 ggttatgtatagcaatgttatgtctcctaagtccatgaatgttgtttttacaaggattgattttgccatcaaaaaaggtctagcggtgcagtttattgtc 27336585  T
Q  272 cgcttacctcctattcatgtgtaagtaatattaatagttaatatt 316  Q
    |||||  ||||||||||||||||||||||||| ||||| ||||||    
T  27336584 cgcttgtctcctattcatgtgtaagtaatattgatagtaaatatt 27336540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 269
Target Start/End: Original strand, 2566195 - 2566310
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||| ||||||  |||||| ||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  2566195 tctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatcaatgttgtgtttacgaggattgattttgccatccaaaaaggtcta 2566294  T
Q  254 gcggcgtagcttgttg 269  Q
    |||||| | |||||||    
T  2566295 gcggcgcaacttgttg 2566310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 2917539 - 2917616
Alignment:
Q  232 ttttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagt 309  Q
    |||||||||||||||||||||||||||| || |||||| | |||| ||||||||||||||||| |||||||| |||||    
T  2917539 ttttgccatccaaaaaggtctagcggcgcagtttgttgcctgcttgcctcctattcatgtgtaggtaatattgatagt 2917616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 42921704 - 42921559
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| || | ||| ||||||||||||||  |||||| || || ||||| | |||||||||| | ||||| ||||||||||||||||| ||||    
T  42921704 tctacatagagttcagaaggtcatgcataacaatgtcatgtctcctaagtccataa-tattgtgtttacaaggattggttttgccatccaaaaagatcta 42921606  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| ||||||||  || ||| ||| ||||||| |||||| ||||    
T  42921605 gcggcgcagcttgtttcccacttgccttctattcaagtgtaaataat 42921559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 23023589 - 23023460
Alignment:
Q  169 caaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttg 266  Q
    |||| ||| ||||||| ||||||  |||||| |||||  || |||||||||||||||||||||||||||| |||||||||||| |||| |||| | |||     
T  23023589 caaaaggtcatgcatatcaatgtcatgtctcctaggtcgatgaatgttgtgtttacgaagattgattttgtcatccaaaaaggcctaggggcgcatctta 23023490  T
Q  267 ttgtccgcttacctcctattcatgtgtaag 296  Q
    ||||||| || |||  |||| |||||||||    
T  23023489 ttgtccgtttgccttttatttatgtgtaag 23023460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 303
Target Start/End: Original strand, 32269910 - 32270045
Alignment:
Q  169 caaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttg 266  Q
    |||| ||| ||||||| ||||||  |||||| ||||| ||| |||||||||||||||| ||||||||| |||||||||||| |  |||||| | ||||||    
T  32269910 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttcgccatccaaaaaagcatagcgg-gcagcttg 32270008  T
Q  267 ttgtccgcttacctcctattcatgtgtaagtaatatt 303  Q
    ||  |||||| ||| ||||||| |||||| |||||||    
T  32270009 ttacccgcttgccttctattcaagtgtaaataatatt 32270045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 35456080 - 35456023
Alignment:
Q  105 aaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||||| |||||||||||||||||||||||||||||||| | |||||| ||||    
T  35456080 aaaagttgtgttaagtaaaatggtcaaacatgagaaagcgtgttctaacaatcaacat 35456023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 22188755 - 22188855
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| |||||||||||| |  |||||| ||| | ||| ||||||||||||||||  |||| ||||| |||||||||| |||||    
T  22188755 tctacatagagttcaaaaggtcatgcataacaatatcatgtctcctagattcatgaatgttgtgtttacgagaattggttttgtcatccaaaaaagtcta 22188854  T
Q  254 g 254  Q
    |    
T  22188855 g 22188855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 37873738 - 37873841
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||||||| ||||| ||||||||  || ||  |||||  || ||||||||||||| || |||||||||||| ||| ||||||| |||    
T  37873738 tctacatagagttcaaagggtcatgcagaacaatgtcatgacttctaggtctatgaatgttgtgtttaagaggattgattttgctatcaaaaaaggccta 37873837  T
Q  254 gcgg 257  Q
    ||||    
T  37873838 gcgg 37873841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 8100666 - 8100619
Alignment:
Q  115 tcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  8100666 tcaagtaaaatggtcaaacatgagaaaacgtgttgtgacaatttacat 8100619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 27336818 - 27336759
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacata 163  Q
    ||||||||| |||||| ||| ||||||||||||||||| |||||| |||||||| |||||    
T  27336818 taaaagttgcgtcaagcaaagtggtcaaacatgagaaatcgtgttctgacaatcaacata 27336759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 11005825 - 11005763
Alignment:
Q  214 tgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgctt 276  Q
    ||||||||| | ||||| ||||||||||||||||||  |||||||| ||||||||| ||||||    
T  11005825 tgtgtttactaggattggttttgccatccaaaaaggcttagcggcgcagcttgttgcccgctt 11005763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 15292165 - 15292259
Alignment:
Q  194 tctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattca 288  Q
    |||| ||||| ||| ||||||||||||| || |||||||||||||||||||||| |  | |||||| || |||||| || ||| ||| |||||||    
T  15292165 tctcctaggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaaagcttggcggcgcagtttgttgcccacttgccttctattca 15292259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 37873620 - 37873678
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||| |||||| ||| ||| |||||||||||||||||||| |||||||| ||||    
T  37873620 taaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacat 37873678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 14423667 - 14423591
Alignment:
Q  181 cataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcgg 257  Q
    |||||||||||  |||||||||||| |||||||  |||||| || | ||||| ||||||||||||||||| ||||||||    
T  14423667 cataacaatgtcatgtctcttaggtccataaat--tgtgttcacaaggattggttttgccatccaaaaagatctagcgg 14423591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 15506770 - 15506830
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttg 269  Q
    |||||||||||||||| |||||||||| ||||| ||||||| ||| ||||| | |||||||    
T  15506770 aatgttgtgtttacgaggattgattttaccatcaaaaaaggcctaacggcgcaacttgttg 15506830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 43129665 - 43129601
Alignment:
Q  98 cagtcttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||| |||||| || |||||| ||| ||||||||||||||||| |||||| |||||||| ||||    
T  43129665 cagtcctaaaagatgcgtcaagcaaagtggtcaaacatgagaaaacgtgttctgacaatcaacat 43129601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 8100507 - 8100445
Alignment:
Q  207 taaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgt 270  Q
    |||||||||| ||| ||| |||||||||||||||||||||| | |||| |||| ||||||||||    
T  8100507 taaatgttgt-tttgcgatgattgattttgccatccaaaaaagcctagtggcgcagcttgttgt 8100445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 18176877 - 18176759
Alignment:
Q  200 aggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatg--tgtaagt 297  Q
    |||| ||||||||||||||||||||  ||| |||||| |||  |||||||| || ||| |||   | |||  ||||| |||||||||||||  |||||||    
T  18176877 aggttcataaatgttgtgtttacgataattaattttgtcatttaaaaaggtttaacggtgtaaagtattgctcgcttccctcctattcatgtatgtaagt 18176778  T
Q  298 aatattaatagttaatatt 316  Q
    |||||| ||||| ||||||    
T  18176777 aatattgatagtaaatatt 18176759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 433419 - 433373
Alignment:
Q  102 cttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgtt 148  Q
    |||||||| ||||||||| ||| ||| ||||||||||||||||||||    
T  433419 cttaaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgtt 433373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 34476003 - 34475953
Alignment:
Q  199 taggtacataaatgttgtgtttacgaagattgattttgccatccaaaaagg 249  Q
    ||||| ||| |||||||||||||||||||||| |||| || ||||||||||    
T  34476003 taggtccatgaatgttgtgtttacgaagattgttttttccgtccaaaaagg 34475953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 12033383 - 12033346
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaa 246  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  12033383 aatgttgtgtttacgatgattggttttgccatccaaaa 12033346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 23092763 - 23092694
Alignment:
Q  217 gtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctatt 286  Q
    |||||||| ||||||||||| ||||||| ||||||||||  || || |||||||| |||| ||| |||||    
T  23092763 gtttacgaggattgattttgtcatccaacaaggtctagcaacgcagtttgttgtctgcttgccttctatt 23092694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 23424030 - 23424083
Alignment:
Q  213 ttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttg 266  Q
    ||||||||| |||||||||||||| |||||||||| ||||| ||| | ||||||    
T  23424030 ttgtgtttatgaagattgattttgtcatccaaaaatgtctatcggtgcagcttg 23424083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 8859031 - 8858983
Alignment:
Q  114 gtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||| ||| | |||||||||||||||||||||| |||||||| ||||    
T  8859031 gtcaagcaaagtagtcaaacatgagaaagcgtgttctgacaatcaacat 8858983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 43115461 - 43115497
Alignment:
Q  126 ggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  43115461 ggtcaaatatgagaaagcgtgttttgacaatcaacat 43115497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 156 - 315
Target Start/End: Complemental strand, 28225007 - 28224846
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||||||||||||| |||||||| ||||| ||  ||||| |||||  || ||||||||||||| |||||||  ||||||||||||||||||||||    
T  28225007 tctacatagagtccaaaggattatgcatgacaatattatgtctcctaggtcaatgaatgttgtgtttatgaagatttgttttgccatccaaaaaggtcta 28224908  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatat 315  Q
    |||||| ||||| ||| ||||||  ||||||||||| ||||||||||||| ||||| |||||    
T  28224907 gcggcgcagcttattgcccgcttgtctcctattcatttgtaagtaatattgatagtaaatat 28224846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 17344645 - 17344499
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||||||||||  |||||| ||||| ||| |||||||||||||||| |||||||||| | |||||||||||||||    
T  17344645 tctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttttcgatccaaaaaggtcta 17344546  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
     ||||| ||||||||| | |||| ||| ||||||| |||||| ||||    
T  17344545 tcggcgcagcttgttgccggcttgccttctattcaagtgtaaataat 17344499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 27494304 - 27494165
Alignment:
Q  170 aaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgt 267  Q
    ||||||||||| ||| |||||||  ||||| || ||  || ||| ||||||||||||| |||| |||||||||||||||||||||| ||||| |||||||    
T  27494304 aaagggttatgtatagcaatgttatgtctcctaagtctatgaatattgtgtttacgaatattggttttgccatccaaaaaggtctaacggcgcagcttgt 27494205  T
Q  268 tgtccgcttacctcctattcatgtgtaagtaatattaata 307  Q
    || | |||| |||||||||||| |||||||||||||||||    
T  27494204 tgcctgcttgcctcctattcatatgtaagtaatattaata 27494165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 4413166 - 4413312
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||||| || |||| ||| ||||||| ||| ||  |||||| ||||| ||| ||||||||||| | || ||||||||||||||||||||||||||||    
T  4413166 tctacatagggttcaaaaggtcatgcatagcaaagtcatgtctcctaggtccatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtcta 4413265  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| ||||||||| || ||| ||| ||||||| |||||| ||||    
T  4413266 gcggcgcagcttgttgcccacttgccttctattcaagtgtaaataat 4413312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 13413358 - 13413212
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||||||||||  |||||| ||||| ||| ||||||||||||| ||  |||| |||||||||||||||||| |||    
T  13413358 tctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttatgagaattggttttgccatccaaaaaggccta 13413259  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
     ||||  ||||||||||||||||  || ||||||| |||||| ||||    
T  13413258 acggctcagcttgttgtccgcttgtcttctattcaagtgtaaataat 13413212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 9685515 - 9685637
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||| ||||||| |||| ||| ||| ||| ||||||  |||||| ||||| ||| ||||||||||| || ||||||| ||||||||||||||||||||||    
T  9685515 tctatatagagttcaaaaggtcatggatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacaaagattgtttttgccatccaaaaaggtcta 9685614  T
Q  254 gcggcgtagcttgttgtccgctt 276  Q
    |||||| ||||||||| ||||||    
T  9685615 gcggcgcagcttgttgcccgctt 9685637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 41868008 - 41868153
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||||||||||  ||||||  |||| ||| |||||||||||||||| ||||| |||||||| |||||||| ||||    
T  41868008 tctacatagagttcaaaaggtcatgcataacaatgtcatgtctcccaggtccatgaatgttgtgtttacgaggattggttttgcca-ccaaaaagatcta 41868106  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| | ||||||| |||||| | | ||||||| |||||| ||||    
T  41868107 gcggcgcaacttgttgcccgcttgctttctattcaagtgtaaataat 41868153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 27502369 - 27502269
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||| |||||||||||||||||| |||| |  |||||| ||| |  || ||||||||||||||||||||||||||||| |||||||||||||||    
T  27502369 tctacatagaatccaaagggttatgcatagcaatatcatgtctcctagatctatgaatgttgtgtttacgaagattgattttgcaatccaaaaaggtcta 27502270  T
Q  254 g 254  Q
    |    
T  27502269 g 27502269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 3208406 - 3208490
Alignment:
Q  216 tgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||| |||||| ||| ||||||| |||||| ||||    
T  3208406 tgtttacgaggattggttttgccatccaaaaaggtttagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataat 3208490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 2626002 - 2626093
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||||||||||||||||||| ||||  | ||| | ||||||||| ||||| |||||||||||||||| ||| |||||||||||||| ||||    
T  2626002 aatgttgtgtttacgaagattaatttaactatctacaaaggtctaacggcgcagcttgttgtccgcttgccttctattcatgtgtaattaat 2626093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 27585526 - 27585594
Alignment:
Q  320 tggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagca 388  Q
    ||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||||||||    
T  27585526 tggttaaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaattgtggtatatagca 27585594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 16351944 - 16352037
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaa 247  Q
    |||||||||||| |||| ||| ||||| ||||||||  |||||||||||||||| ||| || ||||||||| ||||| |||||||||| |||||    
T  16351944 tctacatagagttcaaatggtcatgcacaacaatgtcatgtctcttaggtacatgaatattatgtttacgatgattgtttttgccatctaaaaa 16352037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 41702207 - 41702133
Alignment:
Q  226 gattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||| |||||||||||||||||| |||| |||| ||||||||| || ||| ||| |||||||||||||||||||    
T  41702207 gattggttttgccatccaaaaaggcctagtggcgcagcttgttgcccacttgccttctattcatgtgtaagtaat 41702133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 10587144 - 10587201
Alignment:
Q  243 aaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  10587144 aaaaaggtctagcggcgtagcttgttgcccgtttgccttctattcatgtgtaagtaat 10587201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 42122763 - 42122678
Alignment:
Q  215 gtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||||||| || || |||||||||||||||| ||||||||||| ||||| |||| ||||| ||| ||||||| |||||| ||||    
T  42122763 gtgtttacgaggactggttttgccatccaaaaaagtctagcggcgcagcttattgttcgcttgccttctattcaagtgtaaataat 42122678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 30602430 - 30602350
Alignment:
Q  220 tacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    ||||| ||||| |||||||||||||||||| ||||| ||| ||||||||| |||| | ||| |||||||||||||| ||||    
T  30602430 tacgaggattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgcatgccttctattcatgtgtaattaat 30602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 18745109 - 18745200
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||||||||||  | ||||| |||||||||||||||||||||||||||| ||||| |||  |||||  || ||||||| |||||| ||||    
T  18745109 aatgttgtgtttataaggattggttttgccatccaaaaaggtctagcggcgcagcttattgctcgcttgtcttctattcaagtgtaaataat 18745200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 2224116 - 2224047
Alignment:
Q  319 atggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagca 388  Q
    ||||| || ||||||| |||| ||||||||| |||||||||| |||| |||||||||||| |||||||||    
T  2224116 atggtcaaaaactatgaaatatatgtgattcgtgatttattcttgaaatatttaatcgtggtatatagca 2224047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 38723985 - 38724054
Alignment:
Q  247 aggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatatt 316  Q
    ||||||||||| | |||||||||  ||||| ||||||||| |||||||||||||||| ||||| ||||||    
T  38723985 aggtctagcggtgcagcttgttgctcgcttgcctcctatttatgtgtaagtaatattgatagtaaatatt 38724054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 15515302 - 15515362
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttg 269  Q
    ||||||||||| |||| ||||| |||||||||||||||| ||||||||||| || ||||||    
T  15515302 aatgttgtgttcacgaggattggttttgccatccaaaaaagtctagcggcgcagtttgttg 15515362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 44686423 - 44686348
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagatt 229  Q
    |||||||||| |||||||||||||||||| ||||||  |||||| ||||| | | |||||||||||||||| ||||    
T  44686423 tctacatagattccaaagggttatgcatagcaatgttatgtctcctaggtccgtgaatgttgtgtttacgaggatt 44686348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 11921349 - 11921436
Alignment:
Q  199 taggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctatt 286  Q
    ||||| ||| |||||||||||||| | ||||  ||| ||||||||||||| ||||||| || ||||||||  |||||| |||||||||    
T  11921349 taggtccatgaatgttgtgtttactaggattagtttcgccatccaaaaagatctagcgtcgcagcttgttacccgcttccctcctatt 11921436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 4413048 - 4413106
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||| ||||||||| ||| ||| |||||||||||||||||||| |||||||| ||||    
T  4413048 taaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacat 4413106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 19161885 - 19162005
Alignment:
Q  158 tacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagc 255  Q
    |||||||||| |||| ||| ||||||| ||||||  |||||| |||||  || |||  ||||||| ||| ||||||||||| |||||||||||   |||     
T  19161885 tacatagagttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcaatgaatagtgtgttttcgaggattgattttgtcatccaaaaagacgtagt 19161984  T
Q  256 ggcgtagcttgttgtccgctt 276  Q
    |||| |||||| |||||||||    
T  19161985 ggcgcagcttgctgtccgctt 19162005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 41867883 - 41867948
Alignment:
Q  97 gcagtcttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||| |||||||| || |||||| ||| ||||||||||||||||||| |||| |||||||| ||||    
T  41867883 gcagccttaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcatgttctgacaatcaacat 41867948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 20143123 - 20143179
Alignment:
Q  232 ttttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattca 288  Q
    |||||||||||||||||||||||||||| | ||||||||| | || ||| |||||||    
T  20143123 ttttgccatccaaaaaggtctagcggcgcaacttgttgtctgtttgccttctattca 20143179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 2224207 - 2224176
Alignment:
Q  25 tgttgcacgagggacaaaataaaagtgaatat 56  Q
    ||||||||||||||||||||||||||||||||    
T  2224207 tgttgcacgagggacaaaataaaagtgaatat 2224176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 3825682 - 3825639
Alignment:
Q  205 cataaatgttgtgtttacgaagattgattttgccatccaaaaag 248  Q
    ||||||||||||||||| |||||| ||||||| |||||||||||    
T  3825682 cataaatgttgtgtttatgaagatcgattttgtcatccaaaaag 3825639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 13147089 - 13147132
Alignment:
Q  114 gtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatc 157  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||    
T  13147089 gtcaagaaaagtggtcaaacatgagaaagcgtgttctgacaatc 13147132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 16351823 - 16351882
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacata 163  Q
    |||||||||||||||| ||| |||||||||||||||||  ||||| | |||||| |||||    
T  16351823 taaaagttgtgtcaagcaaagtggtcaaacatgagaaaatgtgttctcacaatcaacata 16351882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 32029186 - 32029308
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| ||||| || || |||||||||||  |||||  ||||  ||| ||| | ||||||||||||||| ||| || ||| ||||||||  ||    
T  32029186 tctacatagagttcaaagagtcatccataacaatgtcatgtcttataggatcatgaatatcgtgtttacgaagattaattctgtcattcaaaaaggcata 32029285  T
Q  254 gcggcgtagcttgttgtccgctt 276  Q
    ||||||||| || ||||| ||||    
T  32029286 gcggcgtagtttattgtctgctt 32029308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 5532544 - 5532486
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    |||||| || |||||| ||| ||||||||||||||||| |||||| |||||||| ||||    
T  5532544 taaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttgtgacaatcaacat 5532486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 7760945 - 7761050
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||||| | |||| || ||||||  |||||| || || ||  |||| |||| ||||||| |||||||||| ||||||||||||  ||    
T  7760945 tctacatagagttcaaaggatcatgcgtagcaatgtgatgtctcataagttcaagaatgatgtgcttacgaaaattgattttgacatccaaaaaggctta 7761044  T
Q  254 gcggcg 259  Q
    ||||||    
T  7761045 gcggcg 7761050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 23485038 - 23485159
Alignment:
Q  158 tacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatcc-aaaaaggtctag 254  Q
    |||||||||| |||| | | ||||||||||||| |  ||||| ||||| ||| || ||||||||||| || |||| |||||||| || |||||||| |      
T  23485038 tacatagagttcaaaagatcatgcataacaatgctatgtctcctaggtccatgaacgttgtgtttacaaaaattggttttgccaaccaaaaaaggtttga 23485137  T
Q  255 cggcgtagcttgttgtccgctt 276  Q
    ||||| ||||||||||| ||||    
T  23485138 cggcgcagcttgttgtcggctt 23485159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 19514239 - 19514202
Alignment:
Q  258 cgtagcttgttgtccgcttacctcctattcatgtgtaa 295  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  19514239 cgtagcttgttgtccgcttactttctattcatgtgtaa 19514202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 26407839 - 26407896
Alignment:
Q  199 taggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcg 256  Q
    ||||| ||| |||||||||||||||| |||||||||||| |||| |||| || |||||    
T  26407839 taggttcatgaatgttgtgtttacgatgattgattttgctatcctaaaatgtttagcg 26407896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 27585425 - 27585465
Alignment:
Q  16 aactaagtctgttgcacgagggacaaaataaaagtgaatat 56  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  27585425 aactaaggttgttgcaggagggacaaaataaaagtgaatat 27585465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 316
Target Start/End: Original strand, 34250153 - 34250249
Alignment:
Q  220 tacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaatattaatagttaatatt 316  Q
    ||||| |||| |||||| ||||||||||| ||||   ||| |  |||||||| | || |||| ||||||||||||||||||||| ||| | ||||||    
T  34250153 tacgaggattaattttgtcatccaaaaagatctaatagcgcaatttgttgtcggtttgcctcatattcatgtgtaagtaatattgatattaaatatt 34250249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 103113 - 102967
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    ||||||| |||  |||| ||| ||||||||||||||  |||||| ||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  103113 tctacatcgagctcaaaaggtcatgcataacaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtcta 103014  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| | ||||||| |||||| ||| ||||||| |||||| ||||    
T  103013 gcggcgcaacttgttgcccgcttgccttctattcaagtgtaaataat 102967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 5277 - 5185
Alignment:
Q  208 aaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||| |||||| | | ||||||| |||||| ||||    
T  5277 aaatgttgtgttcacgaggattgactttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcattctattcaagtgtaaataat 5185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 205 - 295
Target Start/End: Complemental strand, 6844 - 6754
Alignment:
Q  205 cataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaa 295  Q
    |||||| |||||||||||||  |||| ||||||||||||||||||||||||| || ||||||||| |||||| ||| ||||||| ||||||    
T  6844 cataaaagttgtgtttacgagaattggttttgccatccaaaaaggtctagcgccgcagcttgttgcccgcttgccttctattcaagtgtaa 6754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 18489 - 18421
Alignment:
Q  320 tggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagca 388  Q
    ||||||| ||||||| |||| ||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  18489 tggttaaaaactatgaaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagca 18421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 18590 - 18550
Alignment:
Q  16 aactaagtctgttgcacgagggacaaaataaaagtgaatat 56  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  18590 aactaaggttgttgcaggagggacaaaataaaagtgaatat 18550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 33257 - 33111
Alignment:
Q  156 tctacatagagtccaaagggttatgcataacaatgtt--gtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtcta 253  Q
    |||||||||||| |||| ||| ||||||| |||| ||  ||||| ||||| ||| || || |||||||||| ||||||||||| ||||||||||||  |     
T  33257 tctacatagagttcaaaaggtcatgcatagcaattttatgtctcctaggtccatgaacgtcgtgtttacgaggattgattttgtcatccaaaaaggcttg 33158  T
Q  254 gcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||| | ||||||||| | |||| ||| ||||||| |||||| ||||    
T  33157 gcggtgcagcttgttgcctgcttgccttctattcaagtgtaaataat 33111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 49419 - 49307
Alignment:
Q  159 acatagagtccaaagggttatgcataacaatgt--tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcg 256  Q
    ||||||||| |||||| | ||||||||||||||  ||||||||| || ||| ||||| || |||||||  ||||||||| ||||| |||| |||||||||    
T  49419 acatagagttcaaaggatcatgcataacaatgtcatgtctcttatgtccatgaatgtagtatttacgagaattgatttttccatctaaaacggtctagcg 49320  T
Q  257 gcgtagcttgttg 269  Q
    ||| | |||||||    
T  49319 gcgcaacttgttg 49307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 17392 - 17468
Alignment:
Q  169 caaagggttatgcataacaatgttgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaa 245  Q
    |||| ||| |||||||| ||||||||||||||||| ||| ||||||||||||| || ||||| |||||| |||||||    
T  17392 caaatggtcatgcataataatgttgtctcttaggtccatgaatgttgtgtttaagatgattgcttttgctatccaaa 17468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 6459 - 6401
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatctacat 162  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||| |||||||| ||||    
T  6459 taaaagttgcgtcaagtaaagtggccaaacatgagaaagcgtgttctgacaatcaacat 6401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 47675 - 47766
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaat 300  Q
    |||||| ||||||| |||||||||||| ||||| ||||| || |||||||  | ||||||||||| ||  || ||||||| |||||||||||    
T  47675 aatgttatgtttacaaagattgattttaccatcgaaaaatgtttagcggcacaacttgttgtccgtttgtcttctattcacgtgtaagtaat 47766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 47521 - 47571
Alignment:
Q  104 taaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgaca 154  Q
    ||||||||| |||||||||||||| |||||||||||||  ||||| |||||    
T  47521 taaaagttgcgtcaagtaaaatggccaaacatgagaaaatgtgttctgaca 47571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 10498 - 10436
Alignment:
Q  95 aagcagtcttaaaagttgtgtcaagtaaaatggtcaaacatgagaaagcgtgttttgacaatc 157  Q
    |||||| | ||||||||| |||||||||||||| ||||||||| || ||||||| ||||||||    
T  10498 aagcagccctaaaagttgcgtcaagtaaaatggccaaacatgataatgcgtgttctgacaatc 10436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 16809 - 16857
Alignment:
Q  209 aatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcgg 257  Q
    |||||||| || ||||  |||||||||||||||||||||||||||||||    
T  16809 aatgttgtattcacgagaattgattttgccatccaaaaaggtctagcgg 16857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 4385 - 4451
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggc 258  Q
    |||||| || || ||||||||||||||||||||| |||| ||||| |||| | |||| |||||||||    
T  4385 tgtctcataagtccataaatgttgtgtttacgaatattggttttgtcatcaagaaagatctagcggc 4451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 342 - 431
Alignment:
Q  212 gttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgttgtccgcttacctcctattcatgtgtaagtaata 301  Q
    ||||||||||||| ||||  ||||||||||||||||||  | | |||| | ||||||| | |||| ||| ||||||| |||||| |||||    
T  342 gttgtgtttacgaggattagttttgccatccaaaaaggctttgtggcgcatcttgttgccggctttccttctattcaagtgtaaataata 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 7572 - 7496
Alignment:
Q  192 tgtctcttaggtacataaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgtagcttgtt 268  Q
    |||||| ||||| ||| |||||| |||||||||  |||| ||||| ||||||||||| |||| ||||  ||||||||    
T  7572 tgtctcataggtccatgaatgttatgtttacgagtattggttttgtcatccaaaaagatctaacggcacagcttgtt 7496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University