View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_16 (Length: 439)
Name: NF8008_low_16
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Original strand, 53470502 - 53470914
Alignment:
| Q |
10 |
aagaatatgggtaaacgagtggcatgaaagtctatcaacaaagtacaaaagtctcttccttatcatgacaaagttcatatataagatgcatgactagtca |
109 |
Q |
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| T |
53470502 |
aagaaaatgggtaaacgagtggcatgaaagtctatcaacaaagtacaaaagtctcttccttatcgtgacaaagttcatatataagatgcatgactagtca |
53470601 |
T |
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| Q |
110 |
aatagcataagttgtatgttttgtgtagggccgtccataagtgggtgcaaacagggtcggacttttaaattattgaggcctcaaactttgagtttttgtg |
209 |
Q |
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| T |
53470602 |
aatagcataagttgtatgttttgtgcagggccgtccataagtgggtgcaaacagggtcggacctttaaattattgaggcctcaaactttgagtttttgtg |
53470701 |
T |
|
| Q |
210 |
agaacatttcaacaatacaagtatgaaacatttaataagcatgacaaaattttagctgtagcctaacggttgtctccaattaaatatagttacttcatgg |
309 |
Q |
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| T |
53470702 |
agaacatttcaacaatacaagtatgaaacatttaataagtacgacaaaattttagctgtagcctagcggttgtctccaattaaatatagttacttcatgg |
53470801 |
T |
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| Q |
310 |
taattgggagcatccttgaaatatcctcctgttgttgacggtgtgttgagatcaattccaggcattgttggtgaaaaatgaagttgaaaattaaattatt |
409 |
Q |
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| T |
53470802 |
taattgggagcatccttgaaatatcctcatgttgttgacggtgtgttgagatcaattccaggcattgttggtgaaaaatgaagttgaaaattaaattatt |
53470901 |
T |
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| Q |
410 |
atattatgtacat |
422 |
Q |
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| T |
53470902 |
atattatgtacat |
53470914 |
T |
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