View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_17 (Length: 424)
Name: NF8008_low_17
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 29 - 408
Target Start/End: Complemental strand, 36164007 - 36163628
Alignment:
| Q |
29 |
tgctcatcccattgacagtgggaaaaggaaaaaacacacttctacaactgaacaccacgactaatgagcttccacaaaaatacaagttcagtatcatgtt |
128 |
Q |
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| T |
36164007 |
tgctcatcccattgacagtgggaaaaggaaaaaacacacttctacaactgaacaccacgactaatgagcttccacaaaaatacaagttcagtatcatgtt |
36163908 |
T |
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| Q |
129 |
gaggtccacaaagtagccaaaccctctgaagttctaatatctgagacgatcaagacaacataacgagttcaaagccaaaaccactctagtactccacatt |
228 |
Q |
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| T |
36163907 |
gaggtccacaaagtagccaaaccctctgaagttctaatatctgagacgatcaagacaacataacgagttcaaagccaaaaccactctagtactccacatt |
36163808 |
T |
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| Q |
229 |
taagagtcaacttcagagcgtatctgaataaaacacactaactactaagataacaaaaataacaattatttggaaaaagatggcgaagagccaaaatcag |
328 |
Q |
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| T |
36163807 |
taagagtcaacttcagagcgtatctgaataaaacacactaactactaagataacaaaaataacaattatttggaaaaagatggcgaagagccaaaatcag |
36163708 |
T |
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| Q |
329 |
cttccaacacgaacatgttccccttaaccactccacatcaacagaacaccggattagcaaaaccgacccccacaaaactc |
408 |
Q |
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| T |
36163707 |
cttccaacacgaacatgttccccttatccactccacatcaacagaacaccgcattagcaaaaccgacccccacaaaactc |
36163628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 363
Target Start/End: Complemental strand, 30079433 - 30079271
Alignment:
| Q |
202 |
gccaaaaccactctagtactccacattt--aagagtcaacttcagagcgtatctgaataaaacacactaactactaagataacaaaaataacaattattt |
299 |
Q |
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| T |
30079433 |
gccaaaatcactcttgtgctccacatctctaagggtcaactttaaaacatatttgaataaaacaaacta-ctactacgacaacaaagatcgcaatcattt |
30079335 |
T |
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| Q |
300 |
ggaaaaagatggcgaagagccaaaatcagcttccaacacgaacatgttccccttaaccactcca |
363 |
Q |
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| T |
30079334 |
agaaaaggatggcataaagccaaaatcacctttctacaccaacaggtgccccttaacaactcca |
30079271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 30079554 - 30079514
Alignment:
| Q |
89 |
ctaatgagcttccacaaaaatacaagttcagtatcatgttg |
129 |
Q |
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| T |
30079554 |
ctaaagagcttccaaaaaaatacaagttcaatatcatgttg |
30079514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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