View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_20 (Length: 358)
Name: NF8008_low_20
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 28976296 - 28976086
Alignment:
| Q |
1 |
tgcccctaatccaacggttcagatataaaacaaataaaaatgaacaattttaaggagagaga--caaagatgtttgtccgtcttcagtttcattgacgac |
98 |
Q |
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| T |
28976296 |
tgcccctaatccaacggttcagatataaagcaaataaaaatgaacaattttaaggagagagaaacaaagatgtttgttcgtcttcagtttcattgacgac |
28976197 |
T |
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| Q |
99 |
tatgctatccatttttcagaatttgccacaaatttgtacccataaaacatgtatctataaaatttcctttcaaaaactcatgccacacaaatcctgtttg |
198 |
Q |
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| T |
28976196 |
tatgctatccatttttcagaatttgccacaaatttgtacccataaagcatgtatctataaaatttcctttcaaaaactcatgccacacaaatcctgtttg |
28976097 |
T |
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| Q |
199 |
ttcacccatgg |
209 |
Q |
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|||||| |||| |
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| T |
28976096 |
ttcaccaatgg |
28976086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 28976019 - 28975950
Alignment:
| Q |
276 |
gaggggaaagaagaagaaatcgttgttttatcatcttaaagagcctctgtgtgttttttgtttcctacaa |
345 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28976019 |
gagggaaaagaagaagaaatcgttgttttatcatcttaaagagcctttgtgtgttttttgtttcctacaa |
28975950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 6378079 - 6378281
Alignment:
| Q |
1 |
tgcccctaatccaacggttcagatataaaacaaataaaaa-tgaacaattttaaggagagaga--caaagatgtttgtccgtcttcagtttcattgacga |
97 |
Q |
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||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||| |
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| T |
6378079 |
tgcccctaatccaacggctcagatataaatcaaataaaaaatgaacaattttaaggagagagaaacaaaggtgtgtgtccctcttcagtttcattgacga |
6378178 |
T |
|
| Q |
98 |
ctatgctatccatttttcagaatttgccacaaatttgtacccataaaacatgtatctataaaatttcctttcaaaaactcatgccacacaaatcctgttt |
197 |
Q |
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| T |
6378179 |
c---------catttttcagaatttgccacaaatttgtatccacaaagcatgtatctataaaatttcctttcaaaaactcatgccacacaaatcctgttt |
6378269 |
T |
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| Q |
198 |
gttcacccatgg |
209 |
Q |
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||||||| |||| |
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| T |
6378270 |
gttcaccaatgg |
6378281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 6378348 - 6378422
Alignment:
| Q |
276 |
gaggggaaagaagaagaaatcgttgttttatcatcttaaagagcctctgtgtgttttttgtttcctacaacacgaaa |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| |
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| T |
6378348 |
gaggggaaagaagaagaaatcgttgttttatcatcttaaagagcctctatgtgttttt--tttcctgcaacacgaaa |
6378422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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