View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_25 (Length: 345)
Name: NF8008_low_25
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 32268556 - 32268873
Alignment:
| Q |
18 |
acaatgagctacttaaaatgagtcttgatttggatttcaagtgttgaacggaaatattaattgttatacatgtttcgcatgattaatgagttaaacaact |
117 |
Q |
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| T |
32268556 |
acaatgagctacttaaaatgagtcttgatttggatttcaagtgttgaacggaaatattaattgttatacatgtttcgcatgattaatgagttaaacaact |
32268655 |
T |
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| Q |
118 |
tgctgctcctgacnnnnnnnnnnnnnnnnnnnnnntaacttgctgctagcactgacttatactatatctttgatactcatcaaggattaaaatatgtgta |
217 |
Q |
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| T |
32268656 |
tgctgctcctgacaaaaataaaaaaataaaaaaaataacttgctgctagcactgacttatactatatctttgatactcatcaaggattaaaatatgtgta |
32268755 |
T |
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| Q |
218 |
attgtcctttannnnnnnnnnnnnnnnnnnnacattcagtatctggcctaaggaccgattaatcttagggtttcaatcttaatgttaattctctccatta |
317 |
Q |
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| T |
32268756 |
attgtcctttatttttcttttttctttttttacattcagtatctggcctaaggatcgattaatcttagggtttcaatcttaatgttaattctctccatta |
32268855 |
T |
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| Q |
318 |
agtttcagtttagtatta |
335 |
Q |
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| T |
32268856 |
agtttcagtttagtatta |
32268873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 32274865 - 32274948
Alignment:
| Q |
42 |
ttgatttggatttcaagtgttgaacggaaatattaattgttatacatgtttcgcatgatta--atgagttaaacaacttgctgct |
124 |
Q |
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| T |
32274865 |
ttgatttggatttcaagtgttgaacggaag-attaattgttatacatgtttcgcatgattaatatgagttaaataactcgctgct |
32274948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 32808819 - 32808897
Alignment:
| Q |
257 |
tatctggcctaaggaccgattaatcttagggtttcaatcttaatgttaattctctccattaagtttcagtttagtatta |
335 |
Q |
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| T |
32808819 |
tatctggcataaggaccggttaatccgagggttttaatcttaatattaattctctccattaagttttagttttgtatta |
32808897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 32808655 - 32808697
Alignment:
| Q |
20 |
aatgagctacttaaaatgagtcttgatttggatttcaagtgtt |
62 |
Q |
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| T |
32808655 |
aatgagctacttaaaatgagtcttgattgggatttcaagtgtt |
32808697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 32274819 - 32274859
Alignment:
| Q |
57 |
agtgttgaacggaaatattaattgttatacatgtttcgcat |
97 |
Q |
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| T |
32274819 |
agtgttgaacggaacgattaattgttatacatgtttcgcat |
32274859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 32808703 - 32808750
Alignment:
| Q |
79 |
tgttatacatgtttcgcatgatta--atgagttaaacaacttgctgct |
124 |
Q |
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| T |
32808703 |
tgttatacatgtttcgcatgtttaatatgagttaaataacttgctgct |
32808750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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