View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_27 (Length: 342)
Name: NF8008_low_27
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2920716 - 2921040
Alignment:
| Q |
1 |
aataaaagataaagataagccccaagtgcattgcagcaaggaaactcactcaattcccagagaaagagagcaaaaataaactgatgatttctctacaacc |
100 |
Q |
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| T |
2920716 |
aataaaagataaagataagccccaagtgcattgcagcaaggaaactcactcaattcccagagaaagagagcaaaaataaactgatgatttctctacaacc |
2920815 |
T |
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| Q |
101 |
ctataaatcatgtcttcaaacaacatttgtattcagcccttcaaactttattacaaatcatagacacacacaaacaagcctgataggacaaaggaagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2920816 |
ctataaatcatgtcttcaaacaacatttgtattcagcccttcaaactttattacaaatcatagacacacacaaacaagcctgataggacaaaggaagata |
2920915 |
T |
|
| Q |
201 |
aaagtacatagaagaaatgtcaagtgcaatgcagaagaaaagaagagtgagaggagaacgtttttgacattggaagaagctggtttggttgagatgtctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2920916 |
aaagtacatagaagaaatgtcaagtgcaatgcagaagaaaagaagagtgagaggagaacgtttttgacattggaagaagctggtttggttgagatgtctg |
2921015 |
T |
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| Q |
301 |
gattgagcactcatgagcgttttct |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
2921016 |
gattgagcactcatgagcgttttct |
2921040 |
T |
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