View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_28 (Length: 342)
Name: NF8008_low_28
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 326
Target Start/End: Complemental strand, 47056447 - 47056150
Alignment:
| Q |
28 |
attgtcatcaactggatgtacaaatatcattacttttaagcattacccnnnnnnnaatcaaacctacaaatatattgaaagaaaaagagatgcaaaaggg |
127 |
Q |
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| T |
47056447 |
attgtcatcaactggatgtacaaatatcattactgttaagcattaccctttttttaatcaaacctagaaatatattgaaa-aaaaagagatgcaaaaagg |
47056349 |
T |
|
| Q |
128 |
aaagggggataagaaccaaaaccctttcggttagcaaaacgaaaacaaggaatccctccctagtttgtttgttgcaaaatcctctctaagctccctatga |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |
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| T |
47056348 |
aaagggggataagaaccaaaaccctttcggttagcaaaacgaaaacaaggaatccctccctagtttatttcttgcaaaatcctctctaagctccctgtga |
47056249 |
T |
|
| Q |
228 |
acaacatcccaccaagtaaagtttcgtgagcttaaacctaaattagccgatttattagcacaatggtttccctccctgaatatatgagtagctaagaaa |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47056248 |
acaacatcccaccaagtaaagtttcgtgagcttaaacctaaattagccgatttattagcacaatggtttccctccctgaatatatgagttgctaagaaa |
47056150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 50777345 - 50777312
Alignment:
| Q |
28 |
attgtcatcaactggatgtacaaatatcattact |
61 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
50777345 |
attgtcatcaattggatgtacaaatatcattact |
50777312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 8959142 - 8959110
Alignment:
| Q |
29 |
ttgtcatcaactggatgtacaaatatcattact |
61 |
Q |
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| T |
8959142 |
ttgtcatcaactggttgtacaaatatcattact |
8959110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 33484027 - 33483995
Alignment:
| Q |
29 |
ttgtcatcaactggatgtacaaatatcattact |
61 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
33484027 |
ttgtcatcaattggatgtacaaatatcattact |
33483995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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