View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_29 (Length: 341)
Name: NF8008_low_29
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 140 - 323
Target Start/End: Original strand, 6266394 - 6266583
Alignment:
| Q |
140 |
aaactcacgtatagtata--ggaaaaatggatctctccatgttatttctcttatgt---tttctctaatttcatatctcaacccttgatcaaa-cttcat |
233 |
Q |
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| T |
6266394 |
aaactcacgtatagtatataggaaaaatggatctctccctgttatttctcttatgtaattttctctaatttcatatctcaacccttgatcaaaacttcat |
6266493 |
T |
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| Q |
234 |
tctttttattcagattctaaaatcatccattctttctttatatatatttcagttatctagatctttcacgttattttctcatacttgttt |
323 |
Q |
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| T |
6266494 |
tctttttattcagattctaaaatcatccattctttctttatatatatttcagttatctagatctttcacgttattttctcatacttgttt |
6266583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 6266272 - 6266348
Alignment:
| Q |
18 |
cttattttaccattgaaaaaatacattttatttggacagcttattttaccaaaagaagaagaaaaaagtccatgtta |
94 |
Q |
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| T |
6266272 |
cttattttaccattgaaaaaatacattttatttggacagcttattttaccaaaagaagaagaaaaaagtccatgtta |
6266348 |
T |
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