View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_3 (Length: 889)
Name: NF8008_low_3
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 851; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 851; E-Value: 0
Query Start/End: Original strand, 1 - 882
Target Start/End: Original strand, 28761716 - 28762595
Alignment:
| Q |
1 |
tttcctctttatagatataccatcgtaaagaaatctaatcaattactatatgatagtttatttattatattatgcgtcacgcaactataaatatgcagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28761716 |
tttcctctttatagatataccatcgtaaagaaatctaatcaattactatag--tagtttatttattatattatgcgtcacgcaactataaatatgcagtc |
28761813 |
T |
|
| Q |
101 |
acagaggtgctcctgtcaggctgtcactaatcactgttaatgtctgtgtgagttttaccgttgttgtggacgtttaggaaggatgttgcattggagatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28761814 |
acagaggtgctcctgtcaggctgtcactaatcactgttaatgtctgtgtgagttttaccgttgttgtggacgtttaggaaggatgttgcattggagatgg |
28761913 |
T |
|
| Q |
201 |
aagtgcagaaatattggaatttctcttggatacaaacataaggcttagtgttagtgtaagttaatatttggctgaacattttttggtgcatttttcatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28761914 |
aagtgcagaaatattggaatttctcttggatacaaacataaggcttagtgttagtgtaagttaatatttggctgaacattttttggtgcatttttcatat |
28762013 |
T |
|
| Q |
301 |
aagtaattttgattaccctcacttgtatgttcattaaggttattatcttcaaggtgtcatgtttgggatgacttatcatttacattaacacatagttcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28762014 |
aagtaattttgattaccctcacttgtatgttcattaaggttattatcttcaaggtgtcatgtttgggatgacttatcatttacattaacacatagttcat |
28762113 |
T |
|
| Q |
401 |
tagaaatggggagatattaaaatcttacataccattatgcttcattgacaatttgccgttgtgcctttaaatttgacgtaagtgttcttcctgaaaattg |
500 |
Q |
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| T |
28762114 |
tagaaatggggagatattaaaatcttacataccattatgcttcattgacaatttgccgttgtgcctttaaatttgacgtaagtgttcttcctgaaaattg |
28762213 |
T |
|
| Q |
501 |
aaattcgccgctgtacttgtatctttatatattatacaatcaaggatctactatcacctcaatgtgatttgaaattctccgttgtatcttcctgaaattt |
600 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28762214 |
aaattcgccgttgtacttgtatctttatatattatacaatcaaggatctactatcacctcaatgtgatttgaaatttgccgttgtatcttcctgaaattt |
28762313 |
T |
|
| Q |
601 |
gtgtgtggctatgttcattttgtatgcatttacaggaagaagtagtttgattaaatgaaactaaccttcttactcgcagctttagttgttttttgtcatc |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28762314 |
gtgtgtggctatgttcattttgtatgcatttacaggaagaagtagtttgattaaatgaaactaaccttcttactcgcagctttagttgttttttgtcatc |
28762413 |
T |
|
| Q |
701 |
tctctgtccattgaaattgttgagcttcattatttactggcatatcatgacttagctatgtgtcccttaagcaaagcatataattatgctttggcagaca |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28762414 |
tctctgtccattgaaattgttgagcttcattatttactggcatatcatgacttagctatgtgtcccttaagcaaagcatataattatgctttggcagaca |
28762513 |
T |
|
| Q |
801 |
tcggttgaggctagtgatgctttgactgtttgagttgtgtccgactcaattggtccagtttctcaattctgatattcttcga |
882 |
Q |
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| T |
28762514 |
tcggttgaggctagtgatgctttgactgtttgagttgtgtccgactcaattggtccagtttctcaattctgatattcgtcga |
28762595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 815 - 874
Target Start/End: Original strand, 42798911 - 42798970
Alignment:
| Q |
815 |
tgatgctttgactgtttgagttgtgtccgactcaattggtccagtttctcaattctgata |
874 |
Q |
| |
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||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||| |
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| T |
42798911 |
tgatgctttgattgtttgagttgtgtctgactcagttggtccagttgctcaattctgata |
42798970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 33352464 - 33352511
Alignment:
| Q |
204 |
tgcagaaatattggaatttctcttggatacaaacataaggcttagtgt |
251 |
Q |
| |
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||||||||||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
33352464 |
tgcagaaatattggactttctcatggatgcaaacataaggcttagtgt |
33352511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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