View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_31 (Length: 322)
Name: NF8008_low_31
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_31 |
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| [»] scaffold0054 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 117 - 306
Target Start/End: Complemental strand, 17135451 - 17135262
Alignment:
| Q |
117 |
attgttatgtcttaatacaacacgtaacaacattaattgaaatcaaaggttgcaggagaaagcctagaaaagctagaaagcataactactgactcaaatg |
216 |
Q |
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| T |
17135451 |
attgttatgtcttaatacaacacgtaacaacactaattgaaatcaaaggttgcaggagaaagcctagaaaagctagaaagcataactactgactcaaatg |
17135352 |
T |
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| Q |
217 |
cgaaggttaggtttcggcttctcatagagggattcacaaatctccagtttcaaatccacgaactcttcttctaggacgaaggagtctatt |
306 |
Q |
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| T |
17135351 |
cgaaggttaggtttcggattctcatagagggattcacaaatctccagtttcaaatccacgaactcttcttctaggaataaggagtctatt |
17135262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17135517 - 17135449
Alignment:
| Q |
1 |
aattgtgtgaaataaaagtaacacaaacattaaatttcgatagaaaaataaacattcgactttgagatt |
69 |
Q |
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| T |
17135517 |
aattgtgtgaaataaaagtaacacaaacattaaatttcgacagaaaaataaacattcgactttgagatt |
17135449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 21280868 - 21280934
Alignment:
| Q |
217 |
cgaaggttaggtttcggcttctcatagagggattcacaaatctccagtttcaaatccacgaactctt |
283 |
Q |
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| T |
21280868 |
cgaaggttagctttcagcttctcatagagggattctcaaatctccagcttcaaatccacgaattctt |
21280934 |
T |
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Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 80882 - 80970
Alignment:
| Q |
217 |
cgaaggttaggtttcggcttctcatagagggattcacaaatctccagtttcaaatccacgaactcttcttctaggacgaaggagtctat |
305 |
Q |
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| T |
80882 |
cgaaggttagctttcagcttctcataaagggattcgcaaatcttcggtttcaaatccagaaactcttcttccatgactaaggattctat |
80970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 80775 - 80846
Alignment:
| Q |
99 |
attacaaaggaattggacattgttatgtcttaatacaacacgtaacaacattaattgaaatcaaaggttgca |
170 |
Q |
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| T |
80775 |
attacaaagaaattggacattgttatgtctcaacacaatgcataacaacaccaattgaaatcaaaggttgca |
80846 |
T |
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