View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8008_low_37 (Length: 279)

Name: NF8008_low_37
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8008_low_37
NF8008_low_37
[»] scaffold0275 (4 HSPs)
scaffold0275 (71-152)||(12040-12121)
scaffold0275 (73-152)||(6405-6484)
scaffold0275 (1-59)||(6247-6305)
scaffold0275 (1-59)||(11902-11960)
[»] chr8 (1 HSPs)
chr8 (115-152)||(5004543-5004580)


Alignment Details
Target: scaffold0275 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 12040 - 12121
Alignment:
Q  71 aagagtgtttttagcactcctcaaatttcaaacctataactaattaattacttcagtacctgctccaacatcaatcactgag 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12040 aagagtgtttttagcactcctcaaatttcaaacctataactaattaattacttcagtacctgctccaacatcaatcactgag 12121  T

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Target: scaffold0275; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 6405 - 6484
Alignment:
Q  73 gagtgtttttagcactcctcaaatttcaaacctataactaattaattacttcagtacctgctccaacatcaatcactgag 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6405 gagtgtttttagcactcctcaaatttcaaacctataactaattaattacttcagtacctgctccaacatcagtcactgag 6484  T

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Target: scaffold0275; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6247 - 6305
Alignment:
Q  1 gaaaaatcctatgaagactctctttatgatatactctctaacagtgatatactctctaa 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6247 gaaaaatcctatgaagactctctttatgatatactctctaacagtgatatactctctaa 6305  T

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Target: scaffold0275; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11902 - 11960
Alignment:
Q  1 gaaaaatcctatgaagactctctttatgatatactctctaacagtgatatactctctaa 59  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11902 gaaaaatcctatgaagactctctatatgatatactctctaacagtgatatactctctaa 11960  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 5004580 - 5004543
Alignment:
Q  115 taattacttcagtacctgctccaacatcaatcactgag 152  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  5004580 taattacttcggtacctgctccaacatcaattactgag 5004543  T

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