View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8008_low_4 (Length: 654)

Name: NF8008_low_4
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8008_low_4
NF8008_low_4
[»] chr5 (12 HSPs)
chr5 (17-638)||(2066893-2067514)
chr5 (180-227)||(3181717-3181764)
chr5 (169-227)||(1427686-1427744)
chr5 (180-227)||(11081813-11081860)
chr5 (180-228)||(20292994-20293042)
chr5 (176-227)||(23732167-23732218)
chr5 (180-227)||(23766866-23766913)
chr5 (180-227)||(23816714-23816761)
chr5 (180-228)||(20301442-20301490)
chr5 (180-228)||(20305855-20305903)
chr5 (180-228)||(20310259-20310307)
chr5 (581-637)||(41973852-41973908)
[»] chr7 (3 HSPs)
chr7 (261-530)||(1078245-1078511)
chr7 (180-227)||(1421173-1421220)
chr7 (180-230)||(1078164-1078214)
[»] chr3 (40 HSPs)
chr3 (172-228)||(2644358-2644414)
chr3 (172-228)||(2659148-2659204)
chr3 (180-389)||(2441871-2442086)
chr3 (173-228)||(7942484-7942539)
chr3 (172-228)||(2502147-2502203)
chr3 (173-228)||(754606-754661)
chr3 (512-631)||(2441632-2441751)
chr3 (180-227)||(2696736-2696783)
chr3 (260-385)||(4158013-4158138)
chr3 (180-225)||(7398183-7398228)
chr3 (180-228)||(9561989-9562037)
chr3 (180-228)||(13498223-13498271)
chr3 (175-226)||(2492083-2492134)
chr3 (588-635)||(7432442-7432489)
chr3 (173-228)||(9565826-9565881)
chr3 (180-226)||(768333-768379)
chr3 (180-226)||(2631358-2631404)
chr3 (581-635)||(3754213-3754267)
chr3 (175-228)||(7324430-7324483)
chr3 (185-226)||(7442986-7443027)
chr3 (185-225)||(2459277-2459317)
chr3 (172-228)||(2476633-2476689)
chr3 (172-228)||(7334235-7334291)
chr3 (180-227)||(3754600-3754647)
chr3 (180-227)||(4142138-4142185)
chr3 (180-227)||(4157948-4157995)
chr3 (173-228)||(7430533-7430588)
chr3 (185-228)||(43991959-43992002)
chr3 (173-215)||(746380-746422)
chr3 (174-228)||(1437995-1438048)
chr3 (581-635)||(4142521-4142575)
chr3 (581-635)||(4158331-4158385)
chr3 (180-226)||(9594628-9594674)
chr3 (186-227)||(956381-956422)
chr3 (173-228)||(2635723-2635775)
chr3 (298-375)||(2686419-2686496)
chr3 (180-225)||(23230986-23231031)
chr3 (172-217)||(44001605-44001650)
chr3 (175-227)||(1891063-1891115)
chr3 (180-228)||(37753349-37753397)
[»] chr2 (2 HSPs)
chr2 (180-227)||(36577366-36577413)
chr2 (186-227)||(7156202-7156243)
[»] scaffold0015 (1 HSPs)
scaffold0015 (180-227)||(32333-32380)
[»] chr1 (4 HSPs)
chr1 (180-227)||(23896141-23896188)
chr1 (180-227)||(24629215-24629262)
chr1 (180-223)||(51381459-51381502)
chr1 (180-227)||(51782799-51782846)
[»] scaffold0044 (1 HSPs)
scaffold0044 (173-223)||(89147-89197)
[»] chr6 (3 HSPs)
chr6 (180-225)||(19119065-19119110)
chr6 (180-225)||(19126359-19126404)
chr6 (173-226)||(24417483-24417536)
[»] scaffold0200 (1 HSPs)
scaffold0200 (581-637)||(1160-1216)


Alignment Details
Target: chr5 (Bit Score: 586; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 17 - 638
Target Start/End: Original strand, 2066893 - 2067514
Alignment:
Q  17 cacaaatttccggggtcctttcaaaattaccacacttaaaagtacaattcctagaattgtagacaaatatctttgaatgcggacaaatcttcaccaacac 116  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2066893 cacaaatttccgggatcctttcaaaattaccacacttgaaagtacaattcctagaattgtagacaaatatctttgaatgcgggcaaatcttcaccaacac 2066992  T
Q  117 ttgatcattctcaaaaatatataccgcctcgatgtgatatttactagaatctattgtgtacagtttaatccaagactcttcatttccatactccttcata 216  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2066993 ttgatcattctcaaaaatatgtaccgcctcgatgtgatatttactagaatctattgtgtacagtttaatccaagaccctacatttccatactccttcata 2067092  T
Q  217 atccaaacatccttcatagcccaaacattatcaacggaagttgcgcacaggcaatccctcaacacgtccaaggtccacaatttacacacatctaccccac 316  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2067093 atccaaacatccttcatagcccaaacattatcaccggaagttgcgcacaggcaatccctcaacacgtccaaggtccacaatttacacacatctaccccac 2067192  T
Q  317 cataattgggaggaagaatcttttgataagactctttccccaaatcatatgaaacaataaagcttggatttcttagttggatttcatcagagcacaacca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2067193 cataattgggaggaagaatcttttgataagactctttccccaaatcatatgaaacaataaagcttggatttcttagttggatttcatcagagcacaacca 2067292  T
Q  417 attaattgcaccacttacaaatttttctggttgtagatcaatagggccaacaccgtatggaaagtcttgaatacttttccaaatattggtatccaatgta 516  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2067293 attaattgcactacttacaaattttcctggttgtagatcaatagggccaacaccgtatggaaagtcttgaatacttttccaaatattggtatccaatgta 2067392  T
Q  517 tgaaccttcacttctatcttgtgaatgtaattaccattactatcttgtatttgatatcgcaaaccaacaaccaccttgtaagtatctctaaaagaatcat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2067393 tgaaccttcacttctatcttgtgaatgtaattaccattactatcttgtatttgatatcgcaaaccaacaaccaccttgtaagtatctctaaaagaatcat 2067492  T
Q  617 agccaaaaccaaacgtcatatt 638  Q
    ||||||||||||||||||||||    
T  2067493 agccaaaaccaaacgtcatatt 2067514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 3181764 - 3181717
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||    
T  3181764 tttaatccaagactcttcatttccatattccttcataagccaaacatc 3181717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 1427686 - 1427744
Alignment:
Q  169 attgtgtacagtttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||||| ||||||||||||||||||||  |||||||||||| ||||||| |||||||||    
T  1427686 attgtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatc 1427744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 11081860 - 11081813
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||| |||||||||||| |||||||||||||||||||| |||||||||    
T  11081860 tttagtccaagactctttatttccatactccttcataacccaaacatc 11081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 20293042 - 20292994
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||| |||||||||||| | ||||||| |||||||||||||||||||||    
T  20293042 tttagtccaagactctttaattccatattccttcataatccaaacatcc 20292994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 23732218 - 23732167
Alignment:
Q  176 acagtttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||||||| |||||||| ||| ||| ||||| ||||||||||||||||||||    
T  23732218 acagtttattccaagacgctttattcccatattccttcataatccaaacatc 23732167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 23766866 - 23766913
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||| |||||||||||| ||||||||| || |||||||||||||||||    
T  23766866 tttagtccaagactctttatttccatattctttcataatccaaacatc 23766913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 23816714 - 23816761
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||| |||||||||||| ||||||||| || |||||||||||||||||    
T  23816714 tttagtccaagactctttatttccatattctttcataatccaaacatc 23816761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 20301490 - 20301442
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||| |||||||||||| | || |||| |||||||||||||||||||||    
T  20301490 tttagtccaagactctttaattgcatattccttcataatccaaacatcc 20301442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 20305903 - 20305855
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||| |||||||||||| | ||||||| |||||||||||||| ||||||    
T  20305903 tttagtccaagactctttaattccatattccttcataatccagacatcc 20305855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 20310307 - 20310259
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||| |||||||||||| | ||||||| |||||||||||||| ||||||    
T  20310307 tttagtccaagactctttaattccatattccttcataatccagacatcc 20310259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 637
Target Start/End: Original strand, 41973852 - 41973908
Alignment:
Q  581 caacaaccaccttgtaagtatctctaaaagaatcatagccaaaaccaaacgtcatat 637  Q
    ||||||||||||||||| |||   ||| | ||||||||||||||||| |||||||||    
T  41973852 caacaaccaccttgtaattattagtaacataatcatagccaaaaccatacgtcatat 41973908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 261 - 530
Target Start/End: Original strand, 1078245 - 1078511
Alignment:
Q  261 gcacaggcaatccctcaacacgtccaaggtccacaatttacacacatctaccccaccataattgggaggaagaatcttttgataagactctttccccaaa 360  Q
    ||||| |||||||||||||||  ||||||   | || | ||||||||||||||| |||||||  ||||| | || |||||||||||| ||||| ||||||    
T  1078245 gcacaagcaatccctcaacacacccaaggctaagaagtgacacacatctacccctccataatcaggaggcaaaaccttttgataagattcttttcccaaa 1078344  T
Q  361 tcatatgaaacaataaagcttggatttcttagttggatttcatcagagcacaaccaattaattgcaccacttacaaatttttctggttgtagatcaatag 460  Q
    ||| | |||||||||||||  ||| ||  | ||||||  |||  ||||  |||||||||||| |  ||||| | ||||||| | | ||||    |||| |    
T  1078345 tcaaaagaaacaataaagcgaggactttctcgttggagatcaatagaggtcaaccaattaatcgtgccactcagaaattttccagattgt---ccaattg 1078441  T
Q  461 ggccaacaccgtatggaaagtcttgaatacttttccaaatattggtatccaatgtatgaaccttcacttc 530  Q
    || |||||||  | ||||| |||||||| |||||||||  ||||||| |||||||||||| |||||||||    
T  1078442 ggacaacaccaaaaggaaactcttgaatgcttttccaagaattggtacccaatgtatgaatcttcacttc 1078511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 1421173 - 1421220
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    ||||||||||||||||| |||||| || |||||||||| |||||||||    
T  1421173 tttaatccaagactctttatttccgtattccttcataagccaaacatc 1421220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 1078164 - 1078214
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatcctt 230  Q
    |||| |||| ||||||  |||||||||||||||||||| ||||||||||||    
T  1078164 tttagtccacgactctctatttccatactccttcataacccaaacatcctt 1078214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 2644358 - 2644414
Alignment:
Q  172 gtgtacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    ||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  2644358 gtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2644414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 2659148 - 2659204
Alignment:
Q  172 gtgtacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    ||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  2659148 gtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2659204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 389
Target Start/End: Complemental strand, 2442086 - 2441871
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatccttcatagcc----caaa--cattatcaacggaagttgcgcacaggcaatcc 273  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||||||||||| | ||    ||||  || ||||| |  ||||  ||||||  ||||||    
T  2442086 tttagtccaagaatctttatttccatactccttcataatccaaacatccttcagaaccgaatcaaaatcactatcaccataagtcacgcacaaacaatcc 2441987  T
Q  274 ctcaacacgtccaaggtccacaatttacacacatctaccccaccataattgggaggaagaatcttttgataagactctttccccaaatcatatgaaacaa 373  Q
    ||||||||   ||||| | | || |||||||||| |||||| ||| |||  ||| | |  | ||||||||||||||||||| |||||||| | |||| ||    
T  2441986 ctcaacacaaacaaggccaagaagttacacacatttacccccccagaatcaggaagcaataccttttgataagactctttctccaaatcaaaagaaataa 2441887  T
Q  374 taaagcttggatttct 389  Q
    |||||| |||| ||||    
T  2441886 taaagcgtggacttct 2441871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 7942539 - 7942484
Alignment:
Q  173 tgtacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  7942539 tgtacaatttaatccaagactctttattaccatactccttcataatccaaacatcc 7942484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 2502203 - 2502147
Alignment:
Q  172 gtgtacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||    
T  2502203 gtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatcc 2502147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 754606 - 754661
Alignment:
Q  173 tgtacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||||| |||| |||||||||||| || ||||||||||||||||||||||||||||    
T  754606 tgtacaatttagtccaagactcttgatctccatactccttcataatccaaacatcc 754661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 512 - 631
Target Start/End: Complemental strand, 2441751 - 2441632
Alignment:
Q  512 atgtatgaaccttcacttctatcttgtgaatgtaat--taccattactatcttgtatttgatatcgcaaaccaacaaccaccttgtaagtatctctaaaa 609  Q
    |||||||||||||||||||| |||||   ||| |||  ||||| |||||||||||||  ||  | ||||| |||||||||| |||||| ||||  |||||    
T  2441751 atgtatgaaccttcacttctgtcttgc--atgcaatattaccactactatcttgtataagaccttgcaaaacaacaaccactttgtaattatcattaaaa 2441654  T
Q  610 gaatcatagccaaaaccaaacg 631  Q
    |||||||||||||| |||||||    
T  2441653 gaatcatagccaaagccaaacg 2441632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 2696736 - 2696783
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  2696736 tttaatccaagactctttatttccatattccttcataatccaaacatc 2696783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 385
Target Start/End: Original strand, 4158013 - 4158138
Alignment:
Q  260 cgcacaggcaatccctcaacacgtccaaggtccacaatttacacacatctaccccaccataattgggaggaagaatcttttgataagactctttccccaa 359  Q
    |||||| |||||||||||| ||  |||| | | |||| | ||||||||| ||||| ||  |||| |||||   |||||||||||||||||| ||  ||||    
T  4158013 cgcacaagcaatccctcaaaacacccaaagccgacaagtcacacacatccacccctcccaaattaggaggtgaaatcttttgataagactcctttgccaa 4158112  T
Q  360 atcatatgaaacaataaagcttggat 385  Q
    |||| ||||||||||||||| |||||    
T  4158113 atcaaatgaaacaataaagcatggat 4158138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 7398183 - 7398228
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaaca 225  Q
    |||||||||||||||||||||||||||||||||||| | |||||||    
T  7398183 tttaatccaagactcttcatttccatactccttcatcaaccaaaca 7398228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 9561989 - 9562037
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  9561989 tttagtccaagactcttgatttccatactcattcataatccaaacatcc 9562037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 13498271 - 13498223
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||| |||||||||||| ||||||||| |||||||||||||||||||||    
T  13498271 tttagtccaagactctttatttccatattccttcataatccaaacatcc 13498223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 2492134 - 2492083
Alignment:
Q  175 tacagtttaatccaagactcttcatttccatactccttcataatccaaacat 226  Q
    |||| |||| |||||||||||  |||||||||||||||||||||||||||||    
T  2492134 tacaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 588 - 635
Target Start/End: Original strand, 7432442 - 7432489
Alignment:
Q  588 caccttgtaagtatctctaaaagaatcatagccaaaaccaaacgtcat 635  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||    
T  7432442 caccttgtaattatcactaaatgaatcatagccaaaaccaaacgtcat 7432489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 9565826 - 9565881
Alignment:
Q  173 tgtacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||||| |||| |||||||||||| || ||| ||||||||||||||||||||||||    
T  9565826 tgtacaatttagtccaagactcttgatctccgtactccttcataatccaaacatcc 9565881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 768333 - 768379
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacat 226  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  768333 tttagtccaagactcttcatttccgtactcattcataatccaaacat 768379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 2631404 - 2631358
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacat 226  Q
    |||| |||||||||||| ||||||||| |||||||||||||||||||    
T  2631404 tttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 581 - 635
Target Start/End: Complemental strand, 3754267 - 3754213
Alignment:
Q  581 caacaaccaccttgtaagtatctctaaaagaatcatagccaaaaccaaacgtcat 635  Q
    ||||||||||||||||| ||||  | ||||||||||||||||| |||||||||||    
T  3754267 caacaaccaccttgtaattatcgtttaaagaatcatagccaaagccaaacgtcat 3754213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 7324430 - 7324483
Alignment:
Q  175 tacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||| |||| |||||||||||| |||||| || |||||||||||||||||||||    
T  7324430 tacaatttagtccaagactctttatttccgtagtccttcataatccaaacatcc 7324483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 7442986 - 7443027
Alignment:
Q  185 tccaagactcttcatttccatactccttcataatccaaacat 226  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  7442986 tccaagactcttgatttccatactccttcatgatccaaacat 7443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 2459317 - 2459277
Alignment:
Q  185 tccaagactcttcatttccatactccttcataatccaaaca 225  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  2459317 tccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 2476689 - 2476633
Alignment:
Q  172 gtgtacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    ||||||| |||| |||||||||||| ||||||||| |  ||||||||||||||||||    
T  2476689 gtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatcc 2476633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 7334235 - 7334291
Alignment:
Q  172 gtgtacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    ||||||| |||| |||||||||||| |||||| || |||||||| ||||||||||||    
T  7334235 gtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatcc 7334291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 3754647 - 3754600
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||| |||||||||||| ||||||||| |||||||||| |||||||||    
T  3754647 tttagtccaagactctttatttccatattccttcataacccaaacatc 3754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 4142138 - 4142185
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||| |||||||||||| ||||||||| |||||||||| |||||||||    
T  4142138 tttagtccaagactctttatttccatattccttcataagccaaacatc 4142185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 4157948 - 4157995
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||| |||||||||||| ||||||||| |||||||||| |||||||||    
T  4157948 tttagtccaagactctttatttccatattccttcataagccaaacatc 4157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 7430533 - 7430588
Alignment:
Q  173 tgtacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||||| |||| || |||||| || ||||||||||| |||||||||||||||||||    
T  7430533 tgtacaatttagtctaagactttttatttccatacttcttcataatccaaacatcc 7430588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 43992002 - 43991959
Alignment:
Q  185 tccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||||||||||  ||||||||| |||||||||||||||||||||    
T  43992002 tccaagactctatatttccatattccttcataatccaaacatcc 43991959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 746380 - 746422
Alignment:
Q  173 tgtacagtttaatccaagactcttcatttccatactccttcat 215  Q
    |||||| |||| |||||||||||| ||||||||||||||||||    
T  746380 tgtacaatttagtccaagactcttgatttccatactccttcat 746422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 1438048 - 1437995
Alignment:
Q  174 gtacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    ||||| |||||||||||| |||| ||||||||| |||||||||| ||||||||||    
T  1438048 gtacaatttaatccaagagtctttatttccatattccttcataa-ccaaacatcc 1437995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 635
Target Start/End: Original strand, 4142521 - 4142575
Alignment:
Q  581 caacaaccaccttgtaagtatctctaaaagaatcatagccaaaaccaaacgtcat 635  Q
    ||||||||||||||||| ||||  |  |||||||||||||||| |||||||||||    
T  4142521 caacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcat 4142575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 635
Target Start/End: Original strand, 4158331 - 4158385
Alignment:
Q  581 caacaaccaccttgtaagtatctctaaaagaatcatagccaaaaccaaacgtcat 635  Q
    ||||||||||||||||| ||||  |  |||||||||||||||| |||||||||||    
T  4158331 caacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcat 4158385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 9594628 - 9594674
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacat 226  Q
    |||| ||||||||||||||||||| ||||  ||||||||||||||||    
T  9594628 tttagtccaagactcttcatttccgtacttattcataatccaaacat 9594674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 956422 - 956381
Alignment:
Q  186 ccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||||||||||  |||||||| ||||||||||||||||||||    
T  956422 ccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 2635775 - 2635723
Alignment:
Q  173 tgtacagtttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||||| |||| |||||||||||||| ||||||||||   ||||||||||||||||    
T  2635775 tgtacaatttagtccaagactcttcacttccatactc---cataatccaaacatcc 2635723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 2686419 - 2686496
Alignment:
Q  298 ttacacacatctaccccaccataattgggaggaagaatcttttgataagactctttccccaaatcatatgaaacaata 375  Q
    ||||| ||||||||||| |||||| | |||||    ||||||||||||||||||||  |||||||| | |||||||||    
T  2686419 ttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgccaaatcaaaagaaacaata 2686496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 23230986 - 23231031
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaaca 225  Q
    ||||||||||||||||||||||||||| || ||||| | |||||||    
T  23230986 tttaatccaagactcttcatttccatattctttcattagccaaaca 23231031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 44001650 - 44001605
Alignment:
Q  172 gtgtacagtttaatccaagactcttcatttccatactccttcataa 217  Q
    |||||||||||| |||||||||||| | ||||||| ||||||||||    
T  44001650 gtgtacagtttagtccaagactctttaattccatattccttcataa 44001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 1891063 - 1891115
Alignment:
Q  175 tacagtttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||| |||| ||||||| |||| ||||||||  ||||||||||||||||||||    
T  1891063 tacaatttagtccaagagtctttatttccatgttccttcataatccaaacatc 1891115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 37753349 - 37753397
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatcc 228  Q
    |||| ||||||||||||  |||||||| |||| ||||||||||||||||    
T  37753349 tttagtccaagactctttctttccatattcctccataatccaaacatcc 37753397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 36577413 - 36577366
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  36577413 tttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 7156202 - 7156243
Alignment:
Q  186 ccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  7156202 ccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 32333 - 32380
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||||||||||| |||| ||||||||| |||||||||| |||||||||    
T  32333 tttaatccaagagtctttatttccatattccttcataagccaaacatc 32380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 23896141 - 23896188
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    ||||| ||||||||||| ||||||||| |||||||||| |||||||||    
T  23896141 tttaacccaagactctttatttccatattccttcataagccaaacatc 23896188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 24629215 - 24629262
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    ||||||||||||||||| |||||| || |||||||||| |||||||||    
T  24629215 tttaatccaagactctttatttccgtattccttcataagccaaacatc 24629262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 51381459 - 51381502
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaa 223  Q
    |||| |||||||||||||||||||||| || |||||||||||||    
T  51381459 tttagtccaagactcttcatttccatattctttcataatccaaa 51381502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 51782846 - 51782799
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaacatc 227  Q
    |||| ||||||| | |||||||||||| ||||||||||||||||||||    
T  51782846 tttattccaagattgttcatttccatattccttcataatccaaacatc 51782799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 89197 - 89147
Alignment:
Q  173 tgtacagtttaatccaagactcttcatttccatactccttcataatccaaa 223  Q
    |||||| |||| |||||||||||| ||||||||| |||||||||| |||||    
T  89197 tgtacaatttagtccaagactctttatttccatattccttcataacccaaa 89147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 19119110 - 19119065
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaaca 225  Q
    |||| |||||||||||||||||||||| |||||||| | |||||||    
T  19119110 tttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 19126404 - 19126359
Alignment:
Q  180 tttaatccaagactcttcatttccatactccttcataatccaaaca 225  Q
    |||| |||||||||||||||||||||| |||||||| | |||||||    
T  19126404 tttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 24417483 - 24417536
Alignment:
Q  173 tgtacagtttaatccaagactcttcatttccatactccttcataatccaaacat 226  Q
    |||||| |||| ||||||| |||| ||||||||| || ||||||||||||||||    
T  24417483 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 637
Target Start/End: Original strand, 1160 - 1216
Alignment:
Q  581 caacaaccaccttgtaagtatctctaaaagaatcatagccaaaaccaaacgtcatat 637  Q
    ||||||||||||||||| |||   ||| | ||||||||||||||||| |||||||||    
T  1160 caacaaccaccttgtaattattagtaacataatcatagccaaaaccatacgtcatat 1216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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