View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_5 (Length: 626)
Name: NF8008_low_5
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 320 - 610
Target Start/End: Original strand, 6021821 - 6022121
Alignment:
| Q |
320 |
tttacattttagcatgtgataataacgaattttgcatcctcctcttaatccaaggaaaattcaaagatgtaannnnnnnn---catatcacacaaacgcg |
416 |
Q |
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| T |
6021821 |
tttacattatagcatgtgataataacgaattttgcatcctcctcttaatccaaggaaaattcaaagatgtaatttttttttttcatatcacacaaacgcg |
6021920 |
T |
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| Q |
417 |
caatgatgaaaatgtcaaatatgttacacattctttctatatataattgggtgtcatttagaaaacaaagacaaatatt-------gcttcatttcatta |
509 |
Q |
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| T |
6021921 |
caatgatgaaaatgtcaaatatgttacacattctttctatatataattgggtcacatttagaaagcatagacaaagatttatattggtttcatttcatta |
6022020 |
T |
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| Q |
510 |
aattttccaaatatgacacgttttatgttttctctagcatggccttttgctcttctattagcttcttcattagcttctgctgctatcatggaacacactt |
609 |
Q |
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| T |
6022021 |
aactttccaaatatgacacgttttatgttttctctagcatggccttttgttcttctattagcttcttcattagcttctgctgctatcgtggaacatactt |
6022120 |
T |
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| Q |
610 |
t |
610 |
Q |
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| T |
6022121 |
t |
6022121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 17104873 - 17104789
Alignment:
| Q |
22 |
aatggataaaaattactttttacacaactattgtgtcattcgcctttattagaagtcaatagagttccaggtgaatagtggatta |
106 |
Q |
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| T |
17104873 |
aatggataaaagttactttttacacaactattgtgtcattcgcctttattagaagtcaatagagttgcagttgaatagtgaatta |
17104789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 17104699 - 17104580
Alignment:
| Q |
204 |
ttgtgaattataattagatattatcaaattttaatttaacttgatttaatggaattatgttattt-nnnnnnntgaaaagaaataactcaattctaataa |
302 |
Q |
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| T |
17104699 |
ttgtgaattgtaattagatattatcaaattttcatttaacttgagtcaatggaattatgttatttaaaaaaaatgagaagaaataactcaattttaacaa |
17104600 |
T |
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| Q |
303 |
atgaattaaatgactcattt |
322 |
Q |
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| T |
17104599 |
ataaattaaatgactcattt |
17104580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 35078019 - 35077957
Alignment:
| Q |
207 |
tgaattataattagatattatcaaattt-taatttaacttgatttaatggaattatgttattt |
268 |
Q |
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| T |
35078019 |
tgaattataattagatattatcaaatttatattctaacttgaatcaatgaaattattttattt |
35077957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 23725308 - 23725279
Alignment:
| Q |
207 |
tgaattataattagatattatcaaatttta |
236 |
Q |
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| T |
23725308 |
tgaattataattagatattatcaaatttta |
23725279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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