View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_54 (Length: 232)
Name: NF8008_low_54
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 46826891 - 46826828
Alignment:
| Q |
16 |
agaatacaactaacggccgatccaaacgatcaagaaactcgacattatgaaacaactcttcatt |
79 |
Q |
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| T |
46826891 |
agaatacaactaatggccgatccaaacgatcaagaaactcgacattatgaaacaactcttcatt |
46826828 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 42167980 - 42167927
Alignment:
| Q |
89 |
tataaccaccaaaggagaaatattgcattatgttgcttctcactacaattacaaca |
144 |
Q |
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| T |
42167980 |
tataaccaccaaaggagacat--tgcattatgttgcttctcgcaacaattacaaca |
42167927 |
T |
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