View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_56 (Length: 227)
Name: NF8008_low_56
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 3933744 - 3933553
Alignment:
| Q |
18 |
tattccagtcataacttggtctatttcccaggcttggtttagagcgtacccaatctccaacctcaaatcctggaagtcgttctgcatctccaggagaaac |
117 |
Q |
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| T |
3933744 |
tattccagtcataacttggtctatttcccaggcttggtttagagcgtacccaatctccaacctcaaatcctggaagtcgttctgcatctccaggagaaac |
3933645 |
T |
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| Q |
118 |
tttccacaagctctgcctaccagtgaccctcgcctacaaacaaaaaacatttaaaacacatattgtctgatgtaacctcaagatgaaatcaaat |
211 |
Q |
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| T |
3933644 |
tttccacaagctctgcctaccagtgaccctcgcctacaaacaaaaaacatttaaaacac--attgtctgatgtaacctcaagatgaaatcaaat |
3933553 |
T |
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