View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8008_low_58 (Length: 225)

Name: NF8008_low_58
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8008_low_58
NF8008_low_58
[»] chr1 (2 HSPs)
chr1 (1-187)||(37382204-37382392)
chr1 (1-84)||(4296646-4296732)
[»] chr5 (2 HSPs)
chr5 (11-187)||(34985536-34985711)
chr5 (135-187)||(20407076-20407128)
[»] chr3 (5 HSPs)
chr3 (1-187)||(16859774-16859950)
chr3 (110-180)||(42403592-42403662)
chr3 (110-180)||(42374878-42374948)
chr3 (29-102)||(42374619-42374691)
chr3 (135-180)||(4330169-4330214)
[»] chr8 (1 HSPs)
chr8 (1-187)||(37742614-37742804)
[»] chr4 (2 HSPs)
chr4 (1-144)||(14199396-14199542)
chr4 (49-154)||(37080016-37080124)
[»] chr7 (1 HSPs)
chr7 (11-84)||(46372572-46372644)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 37382392 - 37382204
Alignment:
Q  1 atttctttctaaaaaa--ttcactttatgctattactttacttgttgtggtttaactaaaaacatagttttttatttatttacaaagccgaaattgttat 98  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  37382392 atttctttctaaaaaaaattcactttatgctattactttacttgttgtggtttaactaaaaacatagttttttttttatttacaaagcccaaattattat 37382293  T
Q  99 gcatnnnnnnntaaaaccaaactgatactaaaccatattctcaattctttcactctgagaatcagctgctcatccctctatcccttatt 187  Q
    ||||       ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  37382292 gcataaaaaaataaaaccaaactgatactaaaccatattctcaattctctcactctcagaatcagctgctcatccctctatctcttatt 37382204  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4296646 - 4296732
Alignment:
Q  1 atttctttctaaaa--aattcactttatgctattactttacttgttgtggtttaactaaaaacatag-ttttttatttatttacaaa 84  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  4296646 atttctttctaaaaaaaattcactttatgctattactttacttgttgtggtttaactaaaaacatagtttttttttttatttacaaa 4296732  T

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Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 34985711 - 34985536
Alignment:
Q  11 aaaaaattcactttatgctattactttacttgttgtggtttaactaaaaacatagttttttatttatttacaaagccgaaattgttatgcatnnnnnnnt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||       |    
T  34985711 aaaaaattcactttatgctattactttacttgttgtggtttaactaaaaacatagtttttt-tttatttacaaagcccaaattgttatgcataaaaaaat 34985613  T
Q  111 aaaaccaaactgatactaaaccatattctcaattctttcactctgagaatcagctgctcatccctctatcccttatt 187  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  34985612 aaaactaaactgatactaaaccatattctcaattctctcactctcagaatcagctgctcatccctctatctcttatt 34985536  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 20407076 - 20407128
Alignment:
Q  135 attctcaattctttcactctgagaatcagctgctcatccctctatcccttatt 187  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  20407076 attctcaattctctcactctcagaatcagctgctcatccctctatctcttatt 20407128  T

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Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 16859950 - 16859774
Alignment:
Q  1 atttctttctaaaaaattcactttatgctattactttacttgttgtggtttaactaaaaacatagttttttatttatttacaaagccgaaattgttatgc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  16859950 atttctttctaaagaattcactttatgctattactttacttgttgtggtttaactaaaaacatagttttttatttatttacaaagccgaa---------- 16859861  T
Q  101 atnnnnnnntaaaaccaaactgatactaaaccatattctcaattctttcactctgagaatcagctgctcatccctctatcccttatt 187  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16859860 ataaaaaaataaaaccaaactgatactaaaccatattctcaattctttcactctgagaatcagctgctcatccctctatctcttatt 16859774  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 42403592 - 42403662
Alignment:
Q  110 taaaaccaaactgatactaaaccatattctcaattctttcactctgagaatcagctgctcatccctctatc 180  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  42403592 taaaaccaaactgatactaaaccatattctcaattctctcactctcagaatcagctgctcatccctctatc 42403662  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 42374878 - 42374948
Alignment:
Q  110 taaaaccaaactgatactaaaccatattctcaattctttcactctgagaatcagctgctcatccctctatc 180  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  42374878 taaaaccaaactgatactaaaccatattctcaattctctcactctcagaatcagctgctaatccctctatc 42374948  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 42374619 - 42374691
Alignment:
Q  29 tattactttacttgttgtggtttaactaaaaacatagttttttatttatttacaaagccgaaattgttatgcat 102  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  42374619 tattactttacttgttgtggtttaactaaaaacataatttttt-tttatttacaaagcccaaattgttatgcat 42374691  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 4330169 - 4330214
Alignment:
Q  135 attctcaattctttcactctgagaatcagctgctcatccctctatc 180  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  4330169 attctcaattctctcactctcagaatcagctgctcatccctctatc 4330214  T

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Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 37742804 - 37742614
Alignment:
Q  1 atttctttctaaaaaa---ttcactttatgctattactttacttgttgtggtttaactaaaaacatagtttttta--tttatttacaaagccgaaattgt 95  Q
    |||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||    
T  37742804 atttctttctaaaaataatttcactttatgctattactttacttgttgtggtttaactaaaaacatagttttttatttttatttacaaagcccaaattgt 37742705  T
Q  96 tatgcatnnnnnnntaaaaccaaactgatactaaaccatattctcaattctttcactctgagaatcagctgctcatccctctatcccttatt 187  Q
    |||||||       ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  37742704 tatgcat-aaaaaataaaaccaaactgatactaaaccatattctcaattctctcactctcagaatcagctgctcatccctctatctcttatt 37742614  T

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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 14199542 - 14199396
Alignment:
Q  1 atttctttctaaaaa-attcactttatgctattactttacttgttgtggtttaactaaaaacatagtt--ttttatttatttacaaagccgaaattgtta 97  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  14199542 atttctttctaaaaacattcactttatgctattactttacttgttgtggtttaactaaaaacatagttttttttttttatttacaaagccgaaattgtta 14199443  T
Q  98 tgcatnnnnnnntaaaaccaaactgatactaaaccatattctcaatt 144  Q
    |||||       |||||||||||||||||||||||||||||||||||    
T  14199442 tgcataaaaaaataaaaccaaactgatactaaaccatattctcaatt 14199396  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 37080124 - 37080016
Alignment:
Q  49 tttaactaaaaacatagttttttat---ttatttacaaagccgaaattgttatgcatnnnnnnntaaaaccaaactgatactaaaccatattctcaattc 145  Q
    ||||||||||||||||||||||| |   |||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  37080124 tttaactaaaaacatagttttttttattttatttacaaagcccaaattgttatgcataaaaaaataaaaccaaactgatactaaaccatattctcaattc 37080025  T
Q  146 tttcactct 154  Q
    | |||||||    
T  37080024 tctcactct 37080016  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 46372572 - 46372644
Alignment:
Q  11 aaaaaattcactttatgctattactttacttgttgtggtttaactaaaaacatagttttttatttatttacaaa 84  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||    
T  46372572 aaaaaattcactttatgctattacttcacttgttgtggtttaactaaaaacatagtttttt-tatatttacaaa 46372644  T

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