View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8008_low_6 (Length: 545)
Name: NF8008_low_6
Description: NF8008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8008_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 14928196 - 14928490
Alignment:
| Q |
1 |
catgcctgcctatcttcttttctggggattgattgagatactcattatatctcaatgtcannnnnnnnctaaacagatcaatgggaccaatttgaaagaa |
100 |
Q |
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| T |
14928196 |
catgcctgcctatcttcttttctggggactgattgagatactcattctatctcaatgtcattttttt-ctaaacagatcaatgggaccaatttgaaagaa |
14928294 |
T |
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| Q |
101 |
gatgatgtcgctgtgagcaatgttaaaattgatttaacacgtggaatggaaaaccctcttgaaaggtgcatgttgaagaacttaactgttcctaatcatt |
200 |
Q |
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| T |
14928295 |
gatgatgtcgctgtgagcaacgttaaaattgatttaacacgtggaatggaaaaccctcttgaaaggtgcatgttgaagaacttaactgttcctaatcatt |
14928394 |
T |
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| Q |
201 |
tgttgactgctaacagtaggctgacacatctttcttctttttgcatgcatttcctgatccagaattaaatttttcaaggtactgaattcacttata |
296 |
Q |
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| T |
14928395 |
tgttgactgctaacagtaggctgacacatctttcttctttttgcatgcatttcctgatccagaattaaatttttcaaggtactaaattcacttata |
14928490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 334 - 529
Target Start/End: Original strand, 14928526 - 14928721
Alignment:
| Q |
334 |
gattaataaatagcaattacatttcttagctatgaactgtagttatctgaaatcttgattgtcttcaagaagttatattgcaagttagtgtatgaacatg |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14928526 |
gattaataaatagcaattacatttcttagctatgaactgtagttatctgaaatcttgattgtcttcaagaagttatattgcaagttagtgtatgaacatg |
14928625 |
T |
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| Q |
434 |
gcaactaactgcaaatgttatttctgataaagtactatattgtgcaaaaagcagatgaaagtagttaaatgttattttggttaggtaacggatatt |
529 |
Q |
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| T |
14928626 |
gcaactaacggcaaatgttatttctgataaagtaccatattgtgcaaaaagcagatgaaagtagttaaatgttattttggttaggtaacggatatt |
14928721 |
T |
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